1KDM | pdb_00001kdm

THE CRYSTAL STRUCTURE OF THE HUMAN SEX HORMONE-BINDING GLOBULIN (TETRAGONAL CRYSTAL FORM)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1kdma_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Laminin G-like module	Sex hormone-binding globulin	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8043043	3000120	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_12	e1kdmA1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Glyco_hydro_12	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00054	Laminin G domain (Laminin_G_1)	Laminin G domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	sex hormone-binding globulin	binding hormone binding androgen binding steroid binding lipid binding	-	cellular anatomical structure extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A	IPR001791	Laminin G domain	Domain
A	IPR051145	Growth Arrest-Specific/Sex Hormone-Binding/Vitamin K-Dependent	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P04278	metabolic syndrome X type 2 diabetes mellitus erectile dysfunction prostate cancer uterine corpus leiomyoma Neoplasm Invasiveness alcohol abuse aspiration pneumonitis tinea corporis atopic eczema dermatitis herpetiformis proctitis Hodgkins lymphoma triple-negative breast carcinoma hyperandrogenism metabolic syndrome X type 2 diabetes mellitus erectile dysfunction prostate cancer uterine corpus leiomyoma Neoplasm Invasiveness alcohol abuse aspiration pneumonitis tinea corporis atopic eczema dermatitis herpetiformis proctitis Hodgkins lymphoma triple-negative breast carcinoma hyperandrogenism hypogonadotropic hypogonadism autoimmune thrombocytopenic purpura psoriatic arthritis IgA glomerulonephritis mycosis fungoides acne rheumatic heart disease infertility disorder breast fibrocystic disease neuroblastoma acquired thrombocytopenia sarcoidosis otitis externa adrenocortical insufficiency skin basal cell carcinoma iridocyclitis chronic beryllium disease juvenile idiopathic arthritis contact dermatitis eye disease amenorrhea corneal ulcer anovulation tenosynovitis cryptorchidism granuloma annulare asthma tinea pedis maturity-onset diabetes of the young atrial fibrillation dermatophytosis of groin and perianal area hyperinsulinism autoimmune disease Diamond-Blackfan anemia hypopituitarism multiple sclerosis inborn carbohydrate metabolic disorder blepharoconjunctivitis rheumatoid arthritis bursitis endometriosis acute lymphoblastic leukemia inherited aplastic anemia pemphigus erythema multiforme skin disease iritis polycystic ovary syndrome esophageal squamous cell carcinoma synovitis keratitis angioedema systemic lupus erythematosus glioblastoma aphthous stomatitis thyroiditis cutaneous melanoma primary cutaneous T-cell lymphoma hemorrhoid atopic conjunctivitis melanoma primary ovarian failure trichinosis hypogonadism autoimmune hemolytic anemia ulcerative colitis miliary tuberculosis psoriasis idiopathic acute eosinophilic pneumonia uveitis musculoskeletal system disease brain glioma nephrotic syndrome endometrial carcinoma acquired hyperprolactinemia rosacea inflammatory bowel disease obesity disorder epicondylitis Addison disease seborrheic dermatitis physiological sexual disorder congenital adrenal hyperplasia exanthem allergic rhinitis Klinefelter syndrome postmenopausal osteoporosis ankylosing spondylitis tendinitis Crohn disease gout

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.