1LSH

LIPID-PROTEIN INTERACTIONS IN LIPOVITELLIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1lsha1	All alpha proteins	alpha-alpha superhelix	Lipovitellin-phosvitin complex, superhelical domain	Lipovitellin-phosvitin complex, superhelical domain	Lipovitellin-phosvitin complex, superhelical domain	(Ichthyomyzon unicuspis ) [TaxId: 30308 ],	SCOPe (2.08)
A	d1lsha2	Membrane and cell surface proteins and peptides	Lipovitellin-phosvitin complex	beta-sheet shell regions	Lipovitellin-phosvitin complex	beta-sheet shell regions	(Ichthyomyzon unicuspis ) [TaxId: 30308 ],	SCOPe (2.08)
B	d1lshb_	Membrane and cell surface proteins and peptides	Lipovitellin-phosvitin complex	beta-sheet shell regions	Lipovitellin-phosvitin complex	beta-sheet shell regions	(Ichthyomyzon unicuspis ) [TaxId: 30308 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Lipovitellin-phosvitin complex, superhelical domain	8029076	4001323	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Lipovitellin-phosvitin complex, superhelical domain	8041455	3001293	SCOP2 (2022-06-29)
B	SCOP2 Family	Lipovitellin-phosvitin complex beta-sheet shell regions	8029077	4003109	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Lipovitellin-phosvitin complex beta-sheet shell regions	8041456	3000269	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Vitellogenin_N_1st	e1lshA1	A: beta meanders	X: Lipovitellin-phosvitin complex	H: Lipovitellin LV-1N (From Topology)	T: Lipovitellin LV-1N	F: Vitellogenin_N_1st	ECOD (1.6)
A	DUF1943	e1lshA2	A: beta meanders	X: Lipovitellin-phosvitin complex	H: Lipovitellin LV-1C (From Topology)	T: Lipovitellin LV-1C	F: DUF1943	ECOD (1.6)
A	Vitellogenin_N_2nd	e1lshA3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Vitellogenin_N_2nd	ECOD (1.6)
B	DUF1944	e1lshB1	A: beta meanders	X: Lipovitellin-phosvitin complex	H: Lipovitellin LV-2 (From Topology)	T: Lipovitellin LV-2	F: DUF1944	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.230.10	Mainly Beta	Roll	Lipovitellin-phosvitin complex	beta-sheet shell regions	CATH (4.3.0)
A	1.25.10.20	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Vitellinogen, superhelical	CATH (4.3.0)
A	2.20.50.20	Mainly Beta	Single Sheet	Outer Surface Protein A	domain 2	CATH (4.3.0)
A	2.20.80.10	Mainly Beta	Single Sheet	Lipovitellin-phosvitin complex, chain A, domain 4	Lipovitellin-phosvitin complex, chain A, domain 4	CATH (4.3.0)
B	2.20.90.10	Mainly Beta	Single Sheet	Lipovitellin-phosvitin complex	beta-sheet shell regions	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09172	Vitellinogen, open beta-sheet (Vit_open_b-sht)	Vitellinogen, open beta-sheet	This entry represents the open beta-sheet domain found in vitellinogen, which generally corresponds to a domain within the lipovitellin-1 peptide product. This domain adopts a structure consisting of several large open beta-sheets [1].	Domain
A	PF01347	Lipoprotein amino terminal region (Vitellogenin_N)	Lipoprotein amino terminal region	-	Repeat
B	PF09175	Vitellinogen, beta-sheet shell (Vit_b-sht_shell)	Vitellinogen, beta-sheet shell	This entry represents the beta-sheet shell domain found in vitellinogen, which generally corresponds to the lipovitellin-2 peptide product. This domain consists of several large open beta-sheets [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	LIPOVITELLIN (LV-1N, LV-1C)	nutrient reservoir activity lipid transporter activity transporter activity	cellular response to stimulus response to stimulus response to endogenous stimulus response to estrogen cellular response to estrogen stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to hormone stimulus response to lipid response to estradiol response to oxygen-containing compound cellular response to stimulus response to stimulus response to endogenous stimulus response to estrogen cellular response to estrogen stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to hormone stimulus response to lipid response to estradiol response to oxygen-containing compound response to organic cyclic compound	-
B	LIPOVITELLIN (LV-2)	nutrient reservoir activity lipid transporter activity transporter activity	cellular response to stimulus response to stimulus response to endogenous stimulus response to estrogen cellular response to estrogen stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to hormone stimulus response to lipid response to estradiol response to oxygen-containing compound cellular response to stimulus response to stimulus response to endogenous stimulus response to estrogen cellular response to estrogen stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to hormone stimulus response to lipid response to estradiol response to oxygen-containing compound response to organic cyclic compound	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011030	Lipovitellin-phosvitin complex, superhelical domain	Homologous Superfamily
A	IPR015817	Vitellinogen, open beta-sheet, subdomain 1	Homologous Superfamily
A	IPR015816	Vitellinogen, beta-sheet N-terminal	Homologous Superfamily
A	IPR015258	Vitellinogen, beta-sheet shell	Domain
A	IPR001846	von Willebrand factor, type D domain	Domain
A	IPR015255	Vitellinogen, open beta-sheet	Domain
A	IPR001747	Vitellogenin, N-terminal	Domain
A	IPR015819	Lipid transport protein, beta-sheet shell	Homologous Superfamily
A	IPR050733	Vitellogenin/Apolipophorin	Family
A	IPR037088	Vitellinogen, beta-sheet shell domain superfamily	Homologous Superfamily
B	IPR011030	Lipovitellin-phosvitin complex, superhelical domain	Homologous Superfamily
B	IPR015817	Vitellinogen, open beta-sheet, subdomain 1	Homologous Superfamily
B	IPR015816	Vitellinogen, beta-sheet N-terminal	Homologous Superfamily
B	IPR015258	Vitellinogen, beta-sheet shell	Domain
B	IPR001846	von Willebrand factor, type D domain	Domain
B	IPR015255	Vitellinogen, open beta-sheet	Domain
B	IPR001747	Vitellogenin, N-terminal	Domain
B	IPR015819	Lipid transport protein, beta-sheet shell	Homologous Superfamily
B	IPR050733	Vitellogenin/Apolipophorin	Family
B	IPR037088	Vitellinogen, beta-sheet shell domain superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	Alpha + Beta monotopic/peripheral	Apolipoprotein of LDL particles	Vitellogenin

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	PCA	Parent Component: GLN RESID: AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420