1LVG | pdb_00001lvg

Crystal structure of mouse guanylate kinase in complex with GMP and ADP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1lvga_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Nucleotide and nucleoside kinases	Guanylate kinase	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Guanylate kinase-like	8056727	4004031	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	P-loop nucleotide/nucleoside kinase-like	8056728	3002021	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1lvgA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: GBP	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Guanylate kinase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleobase-containing compound kinase activity nucleoside monophosphate kinase activity kinase activity transferase activity catalytic activity phosphotransferase activity, phosphate group as acceptor GMP kinase activity transferase activity, transferring phosphorus-containing groups	nucleoside phosphate metabolic process primary metabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process cellular response to stimulus nucleoside phosphate metabolic process primary metabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process cellular response to stimulus cellular response to chemical stimulus response to stimulus response to chemical cellular response to xenobiotic stimulus xenobiotic metabolic process response to xenobiotic stimulus nucleotide-sugar metabolic process carbohydrate derivative metabolic process GDP-mannose metabolic process 2'-deoxyribonucleotide metabolic process purine deoxyribonucleoside monophosphate metabolic process deoxyribonucleotide metabolic process dGMP metabolic process purine deoxyribonucleotide metabolic process purine nucleoside monophosphate metabolic process nucleoside monophosphate metabolic process localization establishment of protein localization transport protein transport glycoprotein transport macromolecule localization intracellular protein localization carbohydrate derivative transport establishment of localization purine nucleoside triphosphate metabolic process purine deoxyribonucleoside triphosphate metabolic process dATP metabolic process nucleoside triphosphate metabolic process deoxyribonucleoside triphosphate metabolic process dGDP biosynthetic process dGDP metabolic process deoxyribose phosphate biosynthetic process nucleotide biosynthetic process nucleoside diphosphate biosynthetic process purine deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process purine-containing compound biosynthetic process deoxyribonucleoside diphosphate biosynthetic process carbohydrate derivative biosynthetic process purine nucleoside diphosphate metabolic process 2'-deoxyribonucleotide biosynthetic process purine nucleoside diphosphate biosynthetic process nucleobase-containing compound biosynthetic process nucleoside diphosphate metabolic process biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process purine deoxyribonucleotide biosynthetic process purine deoxyribonucleoside diphosphate biosynthetic process purine nucleotide biosynthetic process ribose phosphate metabolic process purine ribonucleoside monophosphate metabolic process ribonucleotide metabolic process GMP metabolic process purine ribonucleotide metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside diphosphate biosynthetic process ribonucleotide biosynthetic process ribonucleoside diphosphate metabolic process ribose phosphate biosynthetic process GDP biosynthetic process purine ribonucleoside diphosphate metabolic process GDP metabolic process ribonucleoside diphosphate biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle photoreceptor inner segment cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008145	Guanylate kinase/L-type calcium channel beta subunit	Domain
A	IPR017665	Guanylate kinase	Family
A	IPR020590	Guanylate kinase, conserved site	Conserved Site
A	IPR008144	Guanylate kinase-like domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.