1M1O | pdb_00001m1o

Crystal structure of biosynthetic thiolase, C89A mutant, complexed with acetoacetyl-CoA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1m1ob2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, C-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
B	d1m1ob1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, N-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
C	d1m1oc2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, C-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
C	d1m1oc1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, N-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
D	d1m1od2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, C-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
D	d1m1od1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, N-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
A	d1m1oa2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, C-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)
A	d1m1oa1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Biosynthetic thiolase, N-terminal domain	(Zoogloea ramigera ) [TaxId: 350 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Thiolase-like	8043265	3000122	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thiolase-like	8043264	3000122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiolase-like	8043264	3000122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiolase-like	8043265	3000122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thiolase-like	8043264	3000122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thiolase-like	8043265	3000122	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thiolase-like	8043265	3000122	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thiolase-like	8043264	3000122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Chal_sti_synt_N	e1m1oB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.1)
C	Chal_sti_synt_N	e1m1oC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.1)
D	Chal_sti_synt_N	e1m1oD1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.1)
A	Chal_sti_synt_N	e1m1oA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
C	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
D	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Acetyl-CoA acetyltransferase	acetyl-CoA C-acetyltransferase activity acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity C-acetyltransferase activity	poly-hydroxybutyrate biosynthetic process biosynthetic process poly(hydroxyalkanoate) biosynthetic process metabolic process cellular process poly(hydroxyalkanoate) metabolic process poly-hydroxybutyrate metabolic process small molecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR016039	Thiolase-like	Homologous Superfamily
A, B, C, D	IPR020617	Thiolase, C-terminal	Domain
A, B, C, D	IPR020616	Thiolase, N-terminal	Domain
A, B, C, D	IPR020613	Thiolase, conserved site	Conserved Site
A, B, C, D	IPR020610	Thiolase, active site	Active Site
A, B, C, D	IPR020615	Thiolase, acyl-enzyme intermediate active site	Active Site
A, B, C, D	IPR002155	Thiolase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.