1M3D | pdb_00001m3d

Structure of Type IV Collagen NC1 Domains

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d1m3dl1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
I	d1m3di1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
F	d1m3df1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C	d1m3dc1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
K	d1m3dk1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
J	d1m3dj1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
H	d1m3dh1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
G	d1m3dg1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
E	d1m3de1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
D	d1m3dd1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d1m3db1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d1m3da1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	RnaseA	e1m3dL1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
L	Lyase_1	e1m3dL2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
I	C4	e1m3dI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: C4	ECOD (v294.1)
I	Lyase_1	e1m3dI2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
F	RnaseA	e1m3dF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
F	Lyase_1	e1m3dF2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
C	RnaseA	e1m3dC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
C	Lyase_1	e1m3dC2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
K	C4	e1m3dK1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: C4	ECOD (v294.1)
K	Lyase_1	e1m3dK2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
J	RnaseA	e1m3dJ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
J	Lyase_1	e1m3dJ2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
H	RnaseA	e1m3dH1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
H	Lyase_1	e1m3dH2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
G	C4	e1m3dG1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: C4	ECOD (v294.1)
G	Lyase_1	e1m3dG2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
E	RnaseA	e1m3dE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
E	Lyase_1	e1m3dE2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
D	C4	e1m3dD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: C4	ECOD (v294.1)
D	Lyase_1	e1m3dD2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
B	RnaseA	e1m3dB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
B	Lyase_1	e1m3dB2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
A	C4	e1m3dA1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: C4	ECOD (v294.1)
A	Lyase_1	e1m3dA2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
I	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
F	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
C	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
K	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
J	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
H	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
G	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
E	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
D	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
B	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
A	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, F, I, L	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain
A, B, D, E, G A, B, D, E, G, H, J, K	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L	Type IV Collagen Noncollagenous Domain- Alpha2	structural molecule activity extracellular matrix structural constituent	cellular component organization collagen fibril organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization	complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers supramolecular complex
A, B, D, E, G A, B, D, E, G, H, J, K	Type IV Collagen Noncollagenous Domain- Alpha1	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength	cellular component organization collagen fibril organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization	complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F, I, L	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
C, F, I, L	IPR016187	C-type lectin fold	Homologous Superfamily
C, F, I, L	IPR001442	Collagen IV, non-collagenous	Domain
C, F, I, L	IPR019326	Protein NDNF	Family
A, B, D, E, G A, B, D, E, G, H, J, K	IPR008160	Collagen triple helix repeat	Repeat
A, B, D, E, G A, B, D, E, G, H, J, K	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
A, B, D, E, G A, B, D, E, G, H, J, K	IPR050149	Collagen superfamily	Family
A, B, D, E, G A, B, D, E, G, H, J, K	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, D, E, G A, B, D, E, G, H, J, K	IPR001442	Collagen IV, non-collagenous	Domain