1M7Y | pdb_00001m7y

Crystal structure of apple ACC synthase in complex with L-aminoethoxyvinylglycine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1m7ya_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	GABA-aminotransferase-like	1-aminocyclopropane-1-carboxylate synthase (ACC synthase)	(Malus domestica ) [TaxId: 3750 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	GABA-aminotransferase-like	8030975	4000675	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PLP-dependent transferases	8043354	3000954	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1m7yA2	A: Repetitive alpha hairpins	X: ARM repeat	H: ARM repeat	T: TFIIA	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (4.3.0)
A	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	1-aminocyclopropane-1-carboxylate synthase	oxidoreductase activity catalytic activity transferase activity, transferring nitrogenous groups transaminase activity transferase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding carbon-sulfur lyase activity oxidoreductase activity catalytic activity transferase activity, transferring nitrogenous groups transaminase activity transferase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding carbon-sulfur lyase activity 1-aminocyclopropane-1-carboxylate synthase activity lyase activity	developmental process multicellular organismal process reproductive system development reproductive process developmental maturation developmental process involved in reproduction fruit ripening multicellular organism development fruit development anatomical structure maturation anatomical structure development reproductive structure development system development olefinic compound biosynthetic process developmental process multicellular organismal process reproductive system development reproductive process developmental maturation developmental process involved in reproduction fruit ripening multicellular organism development fruit development anatomical structure maturation anatomical structure development reproductive structure development system development olefinic compound biosynthetic process ethylene metabolic process hydrocarbon metabolic process olefin biosynthetic process biosynthetic process alkene biosynthetic process ethylene biosynthetic process olefinic compound metabolic process metabolic process cellular process olefin metabolic process hydrocarbon biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050478	Ethylene and sulfur compound biosynthesis-related protein	Family
A	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A	IPR004838	Aminotransferases, class-I, pyridoxal-phosphate-binding site	Binding Site
A	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A	IPR004839	Aminotransferase, class I/classII, large domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.