1OUP | pdb_00001oup

Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
G [auth B]d1oupb_ Alpha and beta proteins (a+b) His-Me finger endonucleases His-Me finger endonucleases Endonuclease I Periplasmic endonuclease Vvn (Vibrio vulnificus ) [TaxId: 672 ], SCOPe (2.08)
F [auth A]d1oupa_ Alpha and beta proteins (a+b) His-Me finger endonucleases His-Me finger endonucleases Endonuclease I Periplasmic endonuclease Vvn (Vibrio vulnificus ) [TaxId: 672 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth B]SCOP2 FamilyEndonuclease I 8025418 4001236 SCOP2 (2022-06-29)
G [auth B]SCOP2 SuperfamilyHis-Me finger endonucleases 8037797 3001893 SCOP2 (2022-06-29)
F [auth A]SCOP2B SuperfamilyHis-Me finger endonucleases 8037797 3001893 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth B]zf-His_Me_endone1oupB1 A: alpha arraysX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-His_Me_endonECOD (v295.2)
F [auth A]zf-His_Me_endone1oupA1 A: alpha arraysX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-His_Me_endonECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C],
B [auth D],
E [auth F]		5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'---
D [auth G]5'-D(P*GP*C)-3'---
F [auth A],
G [auth B]		Nuclease - -
C [auth E]5'-D(*GP*CP*GP*AP*TP*C)-3'---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth A],
G [auth B]		IPR007346Endonuclease IFamily
F [auth A],
G [auth B]		IPR044925His-Me finger superfamilyHomologous Superfamily