Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G [auth B] | d1oupb_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | Endonuclease I | Periplasmic endonuclease Vvn | (Vibrio vulnificus ) [TaxId: 672 ], | SCOPe (2.08) |
| F [auth A] | d1oupa_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | Endonuclease I | Periplasmic endonuclease Vvn | (Vibrio vulnificus ) [TaxId: 672 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth B] | SCOP2 Family | Endonuclease I | 8025418 | 4001236 | SCOP2 (2022-06-29) |
| G [auth B] | SCOP2 Superfamily | His-Me finger endonucleases | 8037797 | 3001893 | SCOP2 (2022-06-29) |
| F [auth A] | SCOP2B Superfamily | His-Me finger endonucleases | 8037797 | 3001893 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G [auth B] | Endonuclease_1 | e1oupB1 | A: few secondary structure elements | X: His-Me finger endonucleases (From Homology) | H: His-Me finger endonucleases | T: His-Me finger endonucleases | F: Endonuclease_1 | ECOD (1.6) |
| F [auth A] | Endonuclease_1 | e1oupA1 | A: few secondary structure elements | X: His-Me finger endonucleases (From Homology) | H: His-Me finger endonucleases | T: His-Me finger endonucleases | F: Endonuclease_1 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| F [auth A], G [auth B] | Nuclease | - | - | |
| D [auth G] | 5'-D(P*GP*C)-3' | - | - | - |
| C [auth E] | 5'-D(*GP*CP*GP*AP*TP*C)-3' | - | - | - |
| A [auth C], B [auth D], E [auth F] | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| F [auth A], G [auth B] | IPR007346 | Endonuclease I | Family |
| F [auth A], G [auth B] | IPR044925 | His-Me finger superfamily | Homologous Superfamily |
