1PAR
DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1para_ | All alpha proteins | Ribbon-helix-helix | Ribbon-helix-helix | Arc/Mnt-like phage repressors | Arc repressor | (Lederbergvirus P22 ) [TaxId: 10754 ], | SCOPe (2.08) |
D [auth B] | d1parb_ | All alpha proteins | Ribbon-helix-helix | Ribbon-helix-helix | Arc/Mnt-like phage repressors | Arc repressor | (Lederbergvirus P22 ) [TaxId: 10754 ], | SCOPe (2.08) |
E [auth C] | d1parc_ | All alpha proteins | Ribbon-helix-helix | Ribbon-helix-helix | Arc/Mnt-like phage repressors | Arc repressor | (Lederbergvirus P22 ) [TaxId: 10754 ], | SCOPe (2.08) |
F [auth D] | d1pard_ | All alpha proteins | Ribbon-helix-helix | Ribbon-helix-helix | Arc/Mnt-like phage repressors | Arc repressor | (Lederbergvirus P22 ) [TaxId: 10754 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Ribbon-helix-helix | 8037416 | 3000295 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Ribbon-helix-helix | 8037416 | 3000295 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Ribbon-helix-helix | 8037416 | 3000295 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Ribbon-helix-helix | 8037416 | 3000295 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | Arc | e1parA1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: Arc | ECOD (1.6) |
D [auth B] | Arc | e1parB1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: Arc | ECOD (1.6) |
E [auth C] | Arc | e1parC1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: Arc | ECOD (1.6) |
F [auth D] | Arc | e1parD1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: Arc | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.1220.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | CATH (4.3.0) |
D [auth B] | 1.10.1220.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | CATH (4.3.0) |
E [auth C] | 1.10.1220.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | CATH (4.3.0) |
F [auth D] | 1.10.1220.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B], E [auth C], F [auth D] | PF03869 | Arc-like DNA binding domain (Arc) | Arc-like DNA binding domain | Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E] | DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3') | - | - | - |
B [auth F] | DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3') | - | - | - |
C [auth A], D [auth B], E [auth C], F [auth D] | PROTEIN (ARC REPRESSOR) |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B], E [auth C], F [auth D] | IPR013321 | Arc-type ribbon-helix-helix | Homologous Superfamily |
C [auth A], D [auth B], E [auth C], F [auth D] | IPR010985 | Ribbon-helix-helix | Homologous Superfamily |
C [auth A], D [auth B], E [auth C], F [auth D] | IPR005569 | Arc-like DNA binding domain | Domain |