ROLE AND MECHANISM OF THE MATURATION CLEAVAGE OF VP0 IN POLIOVIRUS ASSEMBLY: STRUCTURE OF THE EMPTY CAPSID ASSEMBLY INTERMEDIATE AT 2.9 ANGSTROMS RESOLUTION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | d1pov0_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | Poliovirus coat proteins | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
| C [auth 3] | d1pov3_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | Poliovirus coat proteins | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
| B [auth 1] | d1pov1_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | Poliovirus coat proteins | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth 3] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8036553 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | Beta-Casp | e1pov01 | A: alpha arrays | X: Four-helical up-and-down bundle | H: Glycoside hydrolase family 127 middle domain-related | T: Glycoside hydrolase family 127 middle domain-related | F: Beta-Casp | ECOD (v295.2) |
| A [auth 0] | e1pov02 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: | ECOD (v295.2) | |
| C [auth 3] | Copper-bind | e1pov31 | A: alpha arrays | X: Phage tail fiber protein trimerization domain | H: Phage tail fiber protein trimerization domain | T: Phage tail fiber protein trimerization domain | F: Copper-bind | ECOD (v295.2) |
| B [auth 1] | Rhv | e1pov11 | A: alpha arrays | X: Phage tail fiber protein trimerization domain | H: Phage tail fiber protein trimerization domain | T: Phage tail fiber protein trimerization domain | F: Rhv | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth 0] | 4.10.80.10 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | Picornavirus coat protein VP4 | CATH (4.3.0) |
| A [auth 0] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| C [auth 3] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B [auth 1] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth 0] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
| A [auth 0] | PF02226 | Picornavirus coat protein (VP4) (Pico_P1A) | Picornavirus coat protein (VP4) | - | Family |
| C [auth 3] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |














