Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1rvva_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
AA [auth 1]d1rvv1_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Bd1rvvb_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
BA [auth 2]d1rvv2_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Cd1rvvc_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
CA [auth 3]d1rvv3_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Dd1rvvd_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
DA [auth 4]d1rvv4_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Ed1rvve_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Fd1rvvf_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Gd1rvvg_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Hd1rvvh_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Id1rvvi_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Jd1rvvj_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Kd1rvvk_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Ld1rvvl_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Md1rvvm_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Nd1rvvn_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Od1rvvo_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Pd1rvvp_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Qd1rvvq_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Rd1rvvr_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Sd1rvvs_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Td1rvvt_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Ud1rvvu_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Vd1rvvv_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Wd1rvvw_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Xd1rvvx_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Yd1rvvy_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Zd1rvvz_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyLumazine synthase 8031635 4003586 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLumazine synthase 8044013 3001085 SCOP2 (2022-06-29)
AA [auth 1]SCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
USCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyLumazine synthase 8044013 3001085 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADMRL_synthasee1rvvA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
AA [auth 1]DMRL_synthasee1rvv11 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
BDMRL_synthasee1rvvB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
BA [auth 2]DMRL_synthasee1rvv21 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
CDMRL_synthasee1rvvC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
CA [auth 3]DMRL_synthasee1rvv31 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
DDMRL_synthasee1rvvD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
DA [auth 4]DMRL_synthasee1rvv41 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
EDMRL_synthasee1rvvE1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
FDMRL_synthasee1rvvF1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
GDMRL_synthasee1rvvG1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
HDMRL_synthasee1rvvH1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
IDMRL_synthasee1rvvI1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
JDMRL_synthasee1rvvJ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
KDMRL_synthasee1rvvK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
LDMRL_synthasee1rvvL1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
MDMRL_synthasee1rvvM1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
NDMRL_synthasee1rvvN1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
ODMRL_synthasee1rvvO1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
PDMRL_synthasee1rvvP1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
QDMRL_synthasee1rvvQ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
RDMRL_synthasee1rvvR1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
SDMRL_synthasee1rvvS1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
TDMRL_synthasee1rvvT1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
UDMRL_synthasee1rvvU1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
VDMRL_synthasee1rvvV1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
WDMRL_synthasee1rvvW1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
XDMRL_synthasee1rvvX1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
YDMRL_synthasee1rvvY1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)
ZDMRL_synthasee1rvvZ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: DMRL_synthaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
AA [auth 1]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
B3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
BA [auth 2]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
C3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
CA [auth 3]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
D3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
DA [auth 4]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
E3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
F3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
G3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
H3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
I3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
J3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
K3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
L3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
M3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
N3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
O3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
P3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
Q3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
R3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
S3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
T3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
U3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
V3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
W3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
X3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
Y3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
Z3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF008856,7-dimethyl-8-ribityllumazine synthase (DMRL_synthase)6,7-dimethyl-8-ribityllumazine synthaseThis family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function f ...Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
6,7-dimethyl-8-ribityllumazine synthase  M-CSA #909

Riboflavin is biosynthesised in plants, fungi and certain microorganisms; as animals lack the necessary enzymes to produce this vitamin, they acquire it from dietary sources. The penultimate step in the biosynthesis of riboflavin (vitamin B2) involves the condensation of 3,4-dihydroxy-2-butanone 4-phosphate with 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, which is catalysed by 6,7-dimethyl-8-ribityllumazine synthase (lumazine synthase).

Defined by 1 residue: HIS:A-88
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EC: 2.5.1.78 (UniProt)