1S0Y | pdb_00001s0y

The structure of trans-3-chloroacrylic acid dehalogenase, covalently inactivated by the mechanism-based inhibitor 3-bromopropiolate at 2.3 Angstrom resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d1s0yl_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
J	d1s0yj_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
H	d1s0yh_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
F	d1s0yf_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
D	d1s0yd_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
B	d1s0yb_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
K	d1s0yk_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
I	d1s0yi_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
G	d1s0yg_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
E	d1s0ye_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
C	d1s0yc_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)
A	d1s0ya_	Alpha and beta proteins (a+b)	Tautomerase/MIF	Tautomerase/MIF	4-oxalocrotonate tautomerase-like	Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1	(Pseudomonas pavonaceae ) [TaxId: 47881 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Tautomerase/MIF	8041198	3001770	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Tautomerase/MIF	8041198	3001770	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Tautomerase/MIF	8041198	3001770	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Tautomerase/MIF	8041198	3001770	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Tautomerase/MIF	8041198	3001770	SCOP2B (2022-06-29)
B	SCOP2 Family	4-oxalocrotonate tautomerase-like	8028819	4001527	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Tautomerase/MIF	8041198	3001770	SCOP2 (2022-06-29)
K	SCOP2B Superfamily	Tautomerase/MIF	8041197	3001770	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Tautomerase/MIF	8041197	3001770	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Tautomerase/MIF	8041197	3001770	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Tautomerase/MIF	8041197	3001770	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Tautomerase/MIF	8041197	3001770	SCOP2B (2022-06-29)
A	SCOP2 Family	4-oxalocrotonate tautomerase-like	8028818	4001527	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tautomerase/MIF	8041197	3001770	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e1s0yL1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v294.1)
J		e1s0yJ1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v294.1)
H		e1s0yH1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v294.1)
F		e1s0yF1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v294.1)
D	Tautomerase	e1s0yD1	A: a/b three-layered sandwiches	X: Repetitive alpha hairpins	H: ARM repeat	T: ARM repeat	F: Tautomerase	ECOD (v294.1)
B		e1s0yB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v294.1)
K	IMS_C	e1s0yK1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: IMS_C	ECOD (v294.1)
I	IMS_C	e1s0yI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: IMS_C	ECOD (v294.1)
G	IMS_C	e1s0yG1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: IMS_C	ECOD (v294.1)
E	IMS_C	e1s0yE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: IMS_C	ECOD (v294.1)
C	IMS_C	e1s0yC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: IMS_C	ECOD (v294.1)
A	Tautomerase	e1s0yA1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF	T: Tautomerase/MIF	F: Tautomerase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
J	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
H	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
F	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
D	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
B	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
K	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
I	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
G	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
E	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
C	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
A	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	beta-subunit of trans-3-chloroacrylic acid dehalogenase	isomerase activity catalytic activity	-	-
A, C, E, G, I A, C, E, G, I, K	alpha-subunit of trans-3-chloroacrylic acid dehalogenase	isomerase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR014347	Tautomerase/MIF superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR004370	4-oxalocrotonate tautomerase-like domain	Domain
A, C, E, G, I A, C, E, G, I, K	IPR014347	Tautomerase/MIF superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR004370	4-oxalocrotonate tautomerase-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.