1SL0
Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040254 | 3001272 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040254 | 3001272 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Ribonuclease H-like | 8040253 | 3000143 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040254 | 3001272 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040254 | 3001272 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Ribonuclease H-like | 8040253 | 3000143 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Thioredoxin-like | 8044359 | 3000031 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Thioredoxin-like | 8044359 | 3000031 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | DNA_pol_A_2nd | e1sl0A1 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: DNA_pol_A_2nd | ECOD (1.6) |
E [auth A] | DNA_pol_A_1st | e1sl0A2 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: DNA_pol_A_1st | ECOD (1.6) |
E [auth A] | DNA_pol_A_3rd | e1sl0A5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_A_3rd | ECOD (1.6) |
E [auth A] | RNase_H_2 | e1sl0A4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H_2 | ECOD (1.6) |
G [auth C] | DNA_pol_A_2nd | e1sl0C1 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: DNA_pol_A_2nd | ECOD (1.6) |
G [auth C] | DNA_pol_A_1st | e1sl0C2 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: DNA_pol_A_1st | ECOD (1.6) |
G [auth C] | DNA_pol_A_3rd | e1sl0C5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_A_3rd | ECOD (1.6) |
G [auth C] | RNase_H_2 | e1sl0C4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H_2 | ECOD (1.6) |
F [auth B] | Thioredoxin | e1sl0B1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
H [auth D] | Thioredoxin | e1sl0D1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
E [auth A] | 1.20.1060.10 | Mainly Alpha | Up-down Bundle | Taq DNA Polymerase | Chain T, domain 4 | CATH (4.3.0) |
E [auth A] | 3.30.70.370 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
E [auth A] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
G [auth C] | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
G [auth C] | 1.20.1060.10 | Mainly Alpha | Up-down Bundle | Taq DNA Polymerase | Chain T, domain 4 | CATH (4.3.0) |
G [auth C] | 3.30.70.370 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
G [auth C] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth B] | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
H [auth D] | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], G [auth C] | PF00476 | DNA polymerase family A (DNA_pol_A) | DNA polymerase family A | - | Family |
F [auth B], H [auth D] | PF00085 | Thioredoxin (Thioredoxin) | Thioredoxin | Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth A], G [auth C] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
E [auth A], G [auth C] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
E [auth A], G [auth C] | IPR001098 | DNA-directed DNA polymerase, family A, palm domain | Domain |
E [auth A], G [auth C] | IPR034699 | DNA-directed DNA polymerase T7 | Family |
E [auth A], G [auth C] | IPR002298 | DNA polymerase A | Family |
E [auth A], G [auth C] | IPR019760 | DNA-directed DNA polymerase, family A, conserved site | Conserved Site |
E [auth A], G [auth C] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |
F [auth B], H [auth D] | IPR017937 | Thioredoxin, conserved site | Conserved Site |
F [auth B], H [auth D] | IPR013766 | Thioredoxin domain | Domain |
F [auth B], H [auth D] | IPR005746 | Thioredoxin | Family |
F [auth B], H [auth D] | IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily |