1SVC
NFKB P50 HOMODIMER BOUND TO DNA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth P] | d1svcp1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | p50 subunit of NF-kappa B transcription factor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth P] | d1svcp2 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | p53-like transcription factors | Rel/Dorsal transcription factors, DNA-binding domain | p50 subunit of NF-kappa B (NFKB), N-terminal domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth P] | SCOP2 Family | Rel/Dorsal transcription factors, DNA-binding domain | 8027847 | 4001849 | SCOP2 (2022-06-29) |
B [auth P] | SCOP2 Family | NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain-like | 8054864 | 4007562 | SCOP2 (2022-06-29) |
B [auth P] | SCOP2 Superfamily | p53-like transcription factors | 8040226 | 3000758 | SCOP2 (2022-06-29) |
B [auth P] | SCOP2 Superfamily | E set domains | 8054865 | 3000070 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth P] | RHD_dimer | e1svcP1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: RHD_dimer | ECOD (1.6) |
B [auth P] | RHD_DNA_bind | e1svcP2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: RHD_DNA_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth P] | 2.60.40.340 | Mainly Beta | Sandwich | Immunoglobulin-like | Rel homology domain (RHD), DNA-binding domain | CATH (4.3.0) |
B [auth P] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth P] | PF16179 | Rel homology dimerisation domain (RHD_dimer) | Rel homology dimerisation domain | The Rel homology domain (RHD) is composed of two structural domains, an N-terminal DNA_binding domain (Pfam:PF00554) and a C-terminal dimerisation domain. This is the dimerisation domain [1]. | Domain |
B [auth P] | PF00554 | Rel homology DNA-binding domain (RHD_DNA_bind) | Rel homology DNA-binding domain | Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immu ... | Domain |