1T61 | pdb_00001t61

crystal structure of collagen IV NC1 domain from placenta basement membrane

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1t61f1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C	d1t61c1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
E	d1t61e1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
D	d1t61d1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d1t61b1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d1t61a1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
A	SCOP2 Family	Noncollagenous (NC1) domain of collagen IV	8027621	4002828	SCOP2 (2022-06-29)
A	SCOP2 Family	Noncollagenous (NC1) domain of collagen IV	8027622	4002828	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8040000	3001261	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8040001	3001261	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RnaseA	e1t61F1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
F	Lyase_1	e1t61F2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
C	Lyase_1	e1t61C3	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
C		e1t61C1	A: a/b three-layered sandwiches	X: Hormone receptor domain (HRM, Pfam 02793)	H: Hormone receptor domain (HRM, Pfam 02793)	T: Hormone receptor domain (HRM, Pfam 02793)	F:	ECOD (v294.1)
E	RnaseA	e1t61E1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
E	Lyase_1	e1t61E2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
D	RnaseA	e1t61D1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
D	Lyase_1	e1t61D2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
B	RnaseA	e1t61B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RnaseA	ECOD (v294.1)
B	Lyase_1	e1t61B2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_1	ECOD (v294.1)
A	C4	e1t61A1	A: few secondary structure elements	X: Noncollagenous (NC1) domain of collagen IV	H: Noncollagenous (NC1) domain of collagen IV	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
C	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
E	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
D	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
B	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
A	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, F	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain
A, B, D, E	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	Type IV Collagen	structural molecule activity extracellular matrix structural constituent	cellular component organization collagen fibril organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization	complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers supramolecular complex
A, B, D, E	Type IV Collagen	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength	cellular component organization collagen fibril organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization	complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers complex of network-forming collagens basement membrane extracellular matrix protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network cell periphery collagenous component of basement membrane cellular anatomical structure external encapsulating structure collagen type IV trimer complex of collagen trimers supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
C, F	IPR016187	C-type lectin fold	Homologous Superfamily
C, F	IPR001442	Collagen IV, non-collagenous	Domain
C, F	IPR019326	Protein NDNF	Family
A, B, D, E	IPR008160	Collagen triple helix repeat	Repeat
A, B, D, E	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
A, B, D, E	IPR050149	Collagen superfamily	Family
A, B, D, E	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, D, E	IPR001442	Collagen IV, non-collagenous	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.