1UOK
CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1uoka1 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain | Oligo-1,6-glucosidase | (Bacillus cereus ) [TaxId: 1396 ], | SCOPe (2.08) |
A | d1uoka2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Amylase, catalytic domain | Oligo-1,6, glucosidase | (Bacillus cereus ) [TaxId: 1396 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | alpha-Amylases, C-terminal beta-sheet domain | 8030530 | 4002636 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Amylase, catalytic domain | 8030963 | 4003138 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glycosyl hydrolase domain-like | 8042909 | 3001528 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | (Trans)glycosidases | 8043342 | 3000313 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Malt_amylase_C_2 | e1uokA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Malt_amylase_C_2 | ECOD (1.6) |
A | Alpha-amylase | e1uokA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 3.90.400.10 | Alpha Beta | Alpha-Beta Complex | Oligo-1,6-glucosidase | domain 2 | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF16657 | Maltogenic Amylase, C-terminal domain (Malt_amylase_C) | Maltogenic Amylase, C-terminal domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
OLIGO-1,6-GLUCOSIDASE |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain | |
IPR045857 | Oligo-1,6-glucosidase, domain 2 | Homologous Superfamily | |
IPR032091 | Maltogenic amylase-like, C-terminal | Domain | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
oligo-1,6-glucosidase M-CSA #285 | Oligo-1,6-glucosidase (dextrin 6-alpha-D-glucanohydrolase) hydrolyses the non-reducing terminal alpha-1,6-glucosidic bonds of isomaltosaccharides, panose, and alpha-limit dextrins, but fails to act on alpha,1,4-glucosidic bonds of maltosaccharides [PMID:8370659]. The anomeric configuration of the substrate is retained, thus the mechanism proceeds via a double displacement process [PMID:9193006, PMID:10331869]. In addition, this enzyme belongs to the family 13 of glycosyl hydrolases, also known as the alpha-amylase family. | Defined by 5 residues: ASP:A-98ASP:A-199GLU:A-255HIS:A-328ASP:A-329 | EC: 3.2.1.10 (PDB Primary Data) |