1VYO | pdb_00001vyo

Crystal structure of avidin


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1vyob_ All beta proteins Streptavidin-like Avidin/streptavidin Avidin/streptavidin automated matches CHICKEN (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Ad1vyoa_ All beta proteins Streptavidin-like Avidin/streptavidin Avidin/streptavidin automated matches CHICKEN (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyAvidin/streptavidin 8042736 3001465 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAvidin/streptavidin 8042736 3001465 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSigma_1_2e1vyoB1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Sigma_1_2ECOD (v294.1)
ACHe1vyoA1 A: a/b three-layered sandwichesX: Globin-likeH: Globin-likeT: Globin-likeF: CHECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.40.128.30 Mainly Beta Beta Barrel Lipocalin Avidin-likeCATH (4.3.0)
A2.40.128.30 Mainly Beta Beta Barrel Lipocalin Avidin-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01382Avidin family (Avidin)Avidin familyDomain

InterPro: Protein Family Classification InterPro Database Homepage