1W26
Trigger Factor in Complex with the Ribosome forms a Molecular Cradle for Nascent Proteins
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | TF C-terminus | 8029215 | 4002707 | SCOP2 (2022-06-29) |
A | SCOP2 Family | FKBP immunophilin/proline isomerase | 8029218 | 4001062 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Triger factor/SurA peptide-binding domain-like | 8041594 | 3001632 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Rotamase-like | 8041597 | 3000622 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Trigger factor ribosome-binding domain | 8037652 | 3001141 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Trigger factor ribosome-binding domain | 8037652 | 3001141 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Triger factor/SurA peptide-binding domain-like | 8041594 | 3001632 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Rotamase-like | 8041597 | 3000622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trigger_C | e1w26A5 | A: alpha arrays | X: Triger factor/SurA peptide-binding domain-like (From Homology) | H: Triger factor/SurA peptide-binding domain-like | T: TF C-terminus (Pfam 05698) | F: Trigger_C | ECOD (1.6) |
A | FKBP_C | e1w26A6 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
A | Trigger_N | e1w26A1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: Trigger factor ribosome-binding domain (From Topology) | T: Trigger factor ribosome-binding domain | F: Trigger_N | ECOD (1.6) |
B | Trigger_C | e1w26B2 | A: alpha arrays | X: Triger factor/SurA peptide-binding domain-like (From Homology) | H: Triger factor/SurA peptide-binding domain-like | T: TF C-terminus (Pfam 05698) | F: Trigger_C | ECOD (1.6) |
B | FKBP_C | e1w26B3 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
B | Trigger_N | e1w26B1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: Trigger factor ribosome-binding domain (From Topology) | T: Trigger factor ribosome-binding domain | F: Trigger_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1050 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Trigger factor ribosome-binding domain | CATH (4.3.0) |
A | 1.10.3120.10 | Mainly Alpha | Orthogonal Bundle | Trigger factor, domain 2 | Trigger factor, C-terminal domain | CATH (4.3.0) |
A | 3.10.50.40 | Alpha Beta | Roll | Chitinase A | domain 3 | CATH (4.3.0) |
B | 3.30.70.1050 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Trigger factor ribosome-binding domain | CATH (4.3.0) |
B | 1.10.3120.10 | Mainly Alpha | Orthogonal Bundle | Trigger factor, domain 2 | Trigger factor, C-terminal domain | CATH (4.3.0) |
B | 3.10.50.40 | Alpha Beta | Roll | Chitinase A | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05698 | Bacterial trigger factor protein (TF) C-terminus (Trigger_C) | Bacterial trigger factor protein (TF) C-terminus | - | Family | |
PF05697 | Bacterial trigger factor protein (TF) (Trigger_N) | Bacterial trigger factor protein (TF) | - | Family | |
PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C) | FKBP-type peptidyl-prolyl cis-trans isomerase | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046357 | Peptidyl-prolyl cis-trans isomerase domain superfamily | Homologous Superfamily | |
IPR036611 | Trigger factor ribosome-binding domain superfamily | Homologous Superfamily | |
IPR008881 | Trigger factor, ribosome-binding, bacterial | Domain | |
IPR027304 | Trigger factor/SurA domain superfamily | Homologous Superfamily | |
IPR037041 | Trigger factor, C-terminal domain superfamily | Homologous Superfamily | |
IPR001179 | FKBP-type peptidyl-prolyl cis-trans isomerase domain | Domain | |
IPR008880 | Trigger factor, C-terminal | Domain | |
IPR005215 | Trigger factor | Family |