1W8J | pdb_00001w8j

Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1w8jd1	All beta proteins	SH3-like barrel	Myosin S1 fragment, N-terminal domain	automated matches	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
D	d1w8jd2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Motor proteins	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
C	d1w8jc1	All beta proteins	SH3-like barrel	Myosin S1 fragment, N-terminal domain	automated matches	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
C	d1w8jc2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Motor proteins	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
B	d1w8jb1	All beta proteins	SH3-like barrel	Myosin S1 fragment, N-terminal domain	automated matches	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
B	d1w8jb2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Motor proteins	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
A	d1w8ja1	All beta proteins	SH3-like barrel	Myosin S1 fragment, N-terminal domain	automated matches	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
A	d1w8ja2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Motor proteins	automated matches	CHICKEN (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Myosin s1 fragment, N-terminal domain	8032925	3000319	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	P-loop motor domain	8032926	3002036	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	P-loop motor domain	8032926	3002036	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Myosin s1 fragment, N-terminal domain	8032925	3000319	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Myosin s1 fragment, N-terminal domain	8032925	3000319	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	P-loop motor domain	8032926	3002036	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	P-loop motor domain	8032926	3002036	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Myosin s1 fragment, N-terminal domain	8032925	3000319	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	7kD_DNA_binding	e1w8jD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)
C	7kD_DNA_binding	e1w8jC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)
B	7kD_DNA_binding	e1w8jB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)
A	7kD_DNA_binding	e1w8jA1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.58.530	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)
C	1.20.58.530	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)
B	1.20.58.530	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)
A	1.20.58.530	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00063	Myosin head (motor domain) (Myosin_head)	Myosin head (motor domain)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	MYOSIN VA	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calmodulin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity minus-end directed microfilament motor activity microfilament motor activity macromolecular conformation isomerase activity	localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization	cellular anatomical structure membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm protein-containing complex myosin complex membrane-bounded organelle Golgi membrane cellular anatomical structure membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm protein-containing complex myosin complex membrane-bounded organelle Golgi membrane Golgi apparatus intracellular membrane-bounded organelle endomembrane system bounding membrane of organelle organelle membrane polymeric cytoskeletal fiber actin filament filamentous actin supramolecular fiber supramolecular polymer supramolecular complex intracellular vesicle insulin-responsive compartment cytoplasmic vesicle secretory granule secretory vesicle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D	IPR001609	Myosin head, motor domain-like	Domain
A, B, C, D	IPR002710	Dilute domain	Domain
A, B, C, D	IPR000048	IQ motif, EF-hand binding site	Binding Site
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D	IPR004009	Myosin, SH3 domain	Domain
A, B, C, D	IPR036103	Class V myosin, motor domain	Domain
A, B, C, D	IPR037988	Myosin 5a, cargo-binding domain	Domain
A, B, C, D	IPR058662	Unconventional myosin-Va/b domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.