crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Gd1w91g1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Gd1w91g2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Hd1w91h1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Hd1w91h2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Fd1w91f1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Fd1w91f2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Ed1w91e1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Ed1w91e2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Dd1w91d1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Dd1w91d2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Cd1w91c1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Cd1w91c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Bd1w91b1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Bd1w91b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Ad1w91a1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Beta-D-xylosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Ad1w91a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Beta-D-xylosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
GSCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
HSCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
FSCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
ESCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
DSCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
CSCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8032984 3000313 SCOP2B (2022-06-29)
ASCOP2 FamilyComposite domain of various glycosyl hydrolase families 8020601 4003957 SCOP2 (2022-06-29)
ASCOP2 Familybeta-glycanases 8020604 4003164 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyGlycosyl hydrolase domain-like 8032981 3001528 SCOP2 (2022-06-29)
ASCOP2 Superfamily(Trans)glycosidases 8032984 3000313 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GLdl_recept_be1w91G1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
GNAD_binding_3e1w91G2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
HLdl_recept_be1w91H1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
HNAD_binding_3e1w91H2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
FLdl_recept_be1w91F1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
FNAD_binding_3e1w91F2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
ELdl_recept_be1w91E1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
ENAD_binding_3e1w91E2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
DLdl_recept_be1w91D1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
DNAD_binding_3e1w91D2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
CLdl_recept_be1w91C1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
CNAD_binding_3e1w91C2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
BLdl_recept_be1w91B1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
BNAD_binding_3e1w91B2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
ALdl_recept_be1w91A1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
ANAD_binding_3e1w91A2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR049166Glycosyl hydrolases family 39, N-terminal catalytic domainDomain
A, B, C, D, E
IPR000514Glycoside hydrolase, family 39Family
A, B, C, D, E
IPR051923Glycosyl Hydrolase Family 39Family
A, B, C, D, E
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B, C, D, E
IPR049165Glycosyl hydrolases family 39, active siteActive Site