1X18 | pdb_00001x18

Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I [auth X]	d1x18x1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	GTPase Era, N-terminal domain	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
I [auth X]	d1x18x2	Alpha and beta proteins (a+b)	Alpha-lytic protease prodomain-like	Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	GTPase Era C-terminal domain	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
H	d1x18h1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Ribosomal protein S18	Ribosomal protein S18	Ribosomal protein S18	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
G	d1x18g1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Translational machinery components	Ribosomal protein L18 and S11	Ribosomal protein S11	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
F	d1x18f1	All alpha proteins	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
E	d1x18e1	Alpha and beta proteins (a/b)	Flavodoxin-like	Ribosomal protein S2	Ribosomal protein S2	Ribosomal protein S2	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth X]	SCOP2B Superfamily	Prokaryotic type KH domain (KH-domain type II)	8089829	3001043	SCOP2B (2022-06-29)
I [auth X]	SCOP2B Superfamily	Ras-like P-loop GTPases	8089827	3002022	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ribosomal protein S18	8101581	3001191	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Translational machinery components	8044020	3000571	SCOP2B (2022-06-29)
F	SCOP2 Family	Ribosomal protein S7	8021143	4001112	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Ribosomal protein S7	8033523	3000799	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8044010	3001397	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth X]	HSP90,HATPase_c_3	e1x18X1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: HSP90,HATPase_c_3	ECOD (v295.2)
I [auth X]	Ras	e1x18X2	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Ras	ECOD (v295.2)
H	Pox_D5	e1x18H1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Pox_D5	ECOD (v295.2)
G	Hexokinase_2	e1x18G1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)
F	RabGAP-TBC	e1x18F1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: RabGAP-TBC	ECOD (v295.2)
E	FlaF_Ig-like	e1x18E1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth X]	PF01926	50S ribosome-binding GTPase (MMR_HSR1)	50S ribosome-binding GTPase	-	Family
I [auth X]	PF07650	KH domain (KH_2)	KH domain		Domain
G	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
F	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
E	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth X]	GTP-binding protein era	guanosine tetraphosphate binding guanyl nucleotide binding binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding guanosine tetraphosphate binding guanyl nucleotide binding binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA binding rRNA binding nucleic acid binding small ribosomal subunit rRNA binding GTP binding purine ribonucleoside triphosphate binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis ribosomal small subunit biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly cellular component organization organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribosome assembly protein autophosphorylation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane
H	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
G	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
F	30S ribosomal protein S7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
E	30S ribosomal protein S2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
D	5'-R(PUPGPUPUPGPGPGPUPUPAPAPGPUPCPCPCPGPCPAPAPCPGPAPG)-3'	-	-	-
C	5'-R(PUPUPCPCPCPGPGPGPCPCPUPGPGPGPGPCPCPCPGPC)-3'	-	-	-
B	RNA (31-MER)	-	-	-
A	5'-R(PCPGPAPUPGPGPCPGPAPAP*G)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth X]	IPR005225	Small GTP-binding domain	Domain
I [auth X]	IPR030388	Era-type guanine nucleotide-binding (G) domain	Domain
I [auth X]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
I [auth X]	IPR005662	GTPase Era-like	Family
I [auth X]	IPR004044	K Homology domain, type 2	Domain
I [auth X]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
I [auth X]	IPR006073	GTP binding domain	Domain
I [auth X]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
H	IPR001648	Small ribosomal subunit protein bS18	Family
H	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
H	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
G	IPR001971	Small ribosomal subunit protein uS11	Family
G	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
G	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
G	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
F	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
F	IPR000235	Small ribosomal subunit protein uS7	Family
F	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
F	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
F	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
E	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
E	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
E	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
E	IPR001865	Small ribosomal subunit protein uS2	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.