1XBP

Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
C [auth A]d1xbpa1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
C [auth A]d1xbpa2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
D [auth B]d1xbpb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
E [auth C]d1xbpc1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
F [auth D]d1xbpd1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
G [auth E]d1xbpe1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
I [auth G]d1xbpg1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
I [auth G]d1xbpg2 Alpha and beta proteins (a+b) Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, N-terminal domain (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
J [auth H]d1xbph1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
K [auth I]d1xbpi1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
L [auth J]d1xbpj1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
N [auth L]d1xbpl1 Alpha and beta proteins (a+b) Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
O [auth M]d1xbpm1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
P [auth N]d1xbpn1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal protein L19 Ribosomal protein L19 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
Q [auth O]d1xbpo1 All alpha proteins PABP domain-like Ribosomal protein L20 Ribosomal protein L20 Ribosomal protein L20 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
R [auth P]d1xbpp1 All beta proteins L21p-like L21p-like Ribosomal protein L21p Ribosomal protein L21p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
S [auth Q]d1xbpq1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
T [auth R]d1xbpr1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
U [auth S]d1xbps1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
V [auth T]d1xbpt1 All beta proteins Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein TL5 (general stress protein CTC) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
W [auth U]d1xbpu1 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like Ribosomal L27 protein Ribosomal protein L27 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
X [auth W]d1xbpw1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
Y [auth X]d1xbpx1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Prokaryotic ribosomal protein L30 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
AA [auth Z]d1xbpz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L32p Ribosomal protein L32p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
BA [auth 1]d1xbp11 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L33p Ribosomal protein L33p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
CA [auth 2]d1xbp21 Peptides Ribosomal protein L34p Ribosomal protein L34p Ribosomal protein L34p Ribosomal protein L34p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
DA [auth 3]d1xbp31 Alpha and beta proteins (a+b) L35p-like L35p-like Ribosomal protein L35p Ribosomal protein L35p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
EA [auth 4]d1xbp41 Small proteins Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8038534 3000334 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyNucleic acid-binding proteins 8038538 3000135 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyTranslational proteins 8038543 3000811 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRibosomal protein L4 8038546 3001146 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyRL5-like 8038549 3001709 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyRibosomal protein L6 8038556 3000724 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyRibosomal protein L6 8038552 3000724 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyL9 N-domain-like 8070571 3000338 SCOP2B (2022-06-29)
I [auth G]SCOP2 FamilyRibosomal protein L11, C-terminal domain 8021022 4000731 SCOP2 (2022-06-29)
I [auth G]SCOP2 FamilyRibosomal L11/L12e N-terminal domain-like 8021025 4001161 SCOP2 (2022-06-29)
I [auth G]SCOP2 SuperfamilyRibosomal protein L11, C-terminal domain 8033402 3001186 SCOP2 (2022-06-29)
I [auth G]SCOP2 SuperfamilyRibosomal L11/L12e N-terminal domain-like 8033405 3000950 SCOP2 (2022-06-29)
J [auth H]SCOP2B SuperfamilyRibosomal protein L13 8038555 3001134 SCOP2B (2022-06-29)
K [auth I]SCOP2B Superfamily50S Ribosomal protein L14-like 8038558 3000433 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8038561 3001045 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8038562 3000884 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8038564 3000995 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyTranslational machinery components 8038566 3000571 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8038569 3000334 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyRibosomal protein L20 8038571 3000563 SCOP2B (2022-06-29)
R [auth P]SCOP2B Superfamilyl21p-like 8038572 3002005 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal protein L22 8038576 3001078 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8038577 3000210 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8038578 3000334 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyRibosomal protein L25-like 8038580 3001161 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal L27 protein-like 8038582 3000539 SCOP2B (2022-06-29)
X [auth W]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8038586 3000713 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8038590 3001378 SCOP2B (2022-06-29)
Z [auth Y]SCOP2B SuperfamilyL28p-like 8086128 3001966 SCOP2B (2022-06-29)
AA [auth Z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8038593 3001320 SCOP2B (2022-06-29)
BA [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8038526 3001320 SCOP2B (2022-06-29)
DA [auth 3]SCOP2B SuperfamilyL35p-like 8038530 3000790 SCOP2B (2022-06-29)
EA [auth 4]SCOP2B SuperfamilyRibosomal protein L36 8038532 3001346 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]Ribosomal_L2_1e1xbpA4 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
C [auth A]Ribosomal_L2_Ce1xbpA3 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
D [auth B]Ribosomal_L3e1xbpB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
E [auth C]Ribosomal_L4e1xbpC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
F [auth D]Ribosomal_L5_Ce1xbpD1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
G [auth E]Ribosomal_L6e1xbpE1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
G [auth E]Ribosomal_L6_1e1xbpE2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
H [auth F]Ribosomal_L9_Ne1xbpF1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
I [auth G]Ribosomal_L11e1xbpG1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
I [auth G]Ribosomal_L11_Ne1xbpG2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
J [auth H]Ribosomal_L13e1xbpH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
K [auth I]Ribosomal_L14e1xbpI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
L [auth J]Ribosomal_L27Ae1xbpJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
M [auth K]Ribosomal_L16e1xbpK1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
N [auth L]Ribosomal_L17_1e1xbpL1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
O [auth M]Ribosomal_L18pe1xbpM1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
P [auth N]Ribosomal_L19e1xbpN1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
Q [auth O]Ribosomal_L20e1xbpO1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
R [auth P]Ribosomal_L21pe1xbpP1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
S [auth Q]Ribosomal_L22e1xbpQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
T [auth R]Ribosomal_L23_2e1xbpR1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
U [auth S]ribosomal_L24_1e1xbpS1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
V [auth T]Ribosomal_L25pe1xbpT1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
V [auth T]Ribosomal_TL5_C_1e1xbpT2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: Ribosomal_TL5_C_1ECOD (1.6)
W [auth U]Ribosomal_L27e1xbpU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
X [auth W]Ribosomal_L29e1xbpW1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
Y [auth X]Ribosomal_L30e1xbpX1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
Z [auth Y]Ribosomal_L31e1xbpY1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
AA [auth Z]Ribosomal_L32pe1xbpZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
BA [auth 1]Ribosomal_L33e1xbp11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
CA [auth 2]Ribosomal_L34e1xbp21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
DA [auth 3]Ribosomal_L35pe1xbp31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
EA [auth 4]Ribosomal_L36e1xbp41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
C [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domainDomain
D [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
E [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth D]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
F [auth D]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
G [auth E]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
H [auth F]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
I [auth G]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
I [auth G]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
J [auth H]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
L [auth J]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
N [auth L]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
P [auth N]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
Q [auth O]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
R [auth P]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
S [auth Q]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
T [auth R]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth S]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
U [auth S]PF00467KOW motif (KOW)KOW motif- Family
V [auth T]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...Domain
V [auth T]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
W [auth U]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
X [auth W]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth X]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
Z [auth Y]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BA [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
CA [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]23S RIBOSOMAL RNA---
B [auth 9]5S RIBOSOMAL RNA---
C [auth A]50S ribosomal protein L2
D [auth B]50S ribosomal protein L3
E [auth C]50S ribosomal protein L4
F [auth D]50S ribosomal protein L5
G [auth E]50S ribosomal protein L6
H [auth F]50S ribosomal protein L9
I [auth G]50S ribosomal protein L11
J [auth H]50S ribosomal protein L13
K [auth I]50S ribosomal protein L14
L [auth J]50S ribosomal protein L15
M [auth K]ribosomal protein L16
N [auth L]50S ribosomal protein L17
O [auth M]50S ribosomal protein L18
P [auth N]50S ribosomal protein L19
Q [auth O]50S ribosomal protein L20
R [auth P]50S ribosomal protein L21
S [auth Q]50S ribosomal protein L22
T [auth R]50S ribosomal protein L23
U [auth S]50S ribosomal protein L24
V [auth T]50S ribosomal protein L25
W [auth U]50S ribosomal protein L27
X [auth W]50S ribosomal protein L29
Y [auth X]50S ribosomal protein L30
Z [auth Y]50S ribosomal protein L31
AA [auth Z]50S ribosomal protein L32
BA [auth 1]50S ribosomal protein L33
CA [auth 2]50S ribosomal protein L34
DA [auth 3]50S ribosomal protein L35
EA [auth 4]50S ribosomal protein L36

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth A]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth A]IPR002171Large ribosomal subunit protein uL2Family
D [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth B]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth C]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth C]IPR002136Large ribosomal subunit protein uL4Family
E [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth D]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth D]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth D]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth D]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
F [auth D]IPR002132Large ribosomal subunit protein uL5Family
G [auth E]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth E]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth E]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth E]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
H [auth F]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
H [auth F]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
H [auth F]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
H [auth F]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
H [auth F]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
H [auth F]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
H [auth F]IPR000244Large ribosomal subunit protein bL9Family
I [auth G]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
I [auth G]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
I [auth G]IPR000911Ribosomal protein uL11Family
I [auth G]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
I [auth G]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
I [auth G]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
I [auth G]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
J [auth H]IPR005822Large ribosomal subunit protein uL13Family
J [auth H]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
J [auth H]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
K [auth I]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
K [auth I]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth I]IPR000218Large ribosomal subunit protein uL14Family
K [auth I]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
L [auth J]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
L [auth J]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth J]IPR030878Large ribosomal subunit protein uL15Family
L [auth J]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth J]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth K]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth K]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
M [auth K]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
M [auth K]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth K]IPR047873Large ribosomal subunit protein uL16Family
N [auth L]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
N [auth L]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
N [auth L]IPR000456Large ribosomal subunit protein bL17Family
O [auth M]IPR005484Large ribosomal subunit protein uL18Family
O [auth M]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
P [auth N]IPR001857Large ribosomal subunit protein bL19Family
P [auth N]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth N]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
P [auth N]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth O]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
Q [auth O]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Q [auth O]IPR005813Large ribosomal subunit protein bL20Family
R [auth P]IPR028909Large ribosomal subunit protein bL21-likeFamily
R [auth P]IPR001787Large ribosomal subunit protein bL21Family
R [auth P]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
S [auth Q]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
S [auth Q]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth Q]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth Q]IPR001063Large ribosomal subunit protein uL22Family
S [auth Q]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
T [auth R]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth R]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth R]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth R]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth S]IPR003256Large ribosomal subunit protein uL24Family
U [auth S]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth S]IPR005824KOWDomain
U [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth S]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
V [auth T]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
V [auth T]IPR001021Ribosomal protein bL25, long-formFamily
V [auth T]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
V [auth T]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
V [auth T]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
V [auth T]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
V [auth T]IPR050070Bacterial ribosomal protein bL25Family
W [auth U]IPR001684Large ribosomal subunit protein bL27Family
W [auth U]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
X [auth W]IPR050063Universal ribosomal protein uL29Family
X [auth W]IPR001854Large ribosomal subunit protein uL29Family
X [auth W]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth W]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Y [auth X]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth X]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Y [auth X]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Z [auth Y]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
Z [auth Y]IPR027491Large ribosomal subunit protein bL31 type AFamily
Z [auth Y]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
Z [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AA [auth Z]IPR002677Large ribosomal subunit protein bL32Family
AA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth Z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
BA [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
BA [auth 1]IPR001705Large ribosomal subunit protein bL33Family
BA [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
CA [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
CA [auth 2]IPR000271Large ribosomal subunit protein bL34Family
DA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
DA [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
DA [auth 3]IPR001706Large ribosomal subunit protein bL35Family
DA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
EA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
EA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily