1Y8N
Crystal structure of the PDK3-L2 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1y8na1 | All alpha proteins | Bromodomain-like | alpha-ketoacid dehydrogenase kinase, N-terminal domain | alpha-ketoacid dehydrogenase kinase, N-terminal domain | Pyruvate dehydrogenase kinase | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1y8na2 | Alpha and beta proteins (a+b) | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | alpha-ketoacid dehydrogenase kinase, C-terminal domain | Pyruvate dehydrogenase kinase | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1y8nb_ | All beta proteins | Barrel-sandwich hybrid | Single hybrid motif | Biotinyl/lipoyl-carrier proteins and domains | Lipoyl domain of dihydrolipoamide acetyltransferase | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | alpha-ketoacid dehydrogenase kinase, N-terminal domain | 8032469 | 3001773 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | GHKL (Gyrase, Hsp90, Histidine Kinase, MutL) domain-like | 8032470 | 3000091 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Single hybrid motif | 8043101 | 3001880 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | BCDHK_Adom3 | e1y8nA1 | A: alpha bundles | X: Bromodomain-like | H: alpha-ketoacid dehydrogenase kinase-N (From Topology) | T: alpha-ketoacid dehydrogenase kinase-N | F: BCDHK_Adom3 | ECOD (1.6) |
A | HATPase_c | e1y8nA2 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c | ECOD (1.6) |
B | Biotin_lipoyl | e1y8nB1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Biotin_lipoyl | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.140.20 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
A | 3.30.565.10 | Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Histidine kinase-like ATPase, C-terminal domain | CATH (4.3.0) |
B | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. | Domain | |
PF10436 | Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase (BCDHK_Adom3) | Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase | - | Family | |
PF00364 | Biotin-requiring enzyme (Biotin_lipoyl) | Biotin-requiring enzyme | This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. | Domain |