Annotations: 1YCE

Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth d]	C1-set	e1yced1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
Y [auth c]	C1-set	e1ycec1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
X [auth b]	C1-set	e1yceb1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
W [auth a]	C1-set	e1ycea1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
V	C1-set	e1yceV1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
U	C1-set	e1yceU1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
T	C1-set	e1yceT1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
S	C1-set	e1yceS1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
RA [auth v]	C1-set	e1ycev1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
R	C1-set	e1yceR1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
QA [auth u]	C1-set	e1yceu1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
Q	C1-set	e1yceQ1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
PA [auth t]	C1-set	e1ycet1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
P	C1-set	e1yceP1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
OA [auth s]	C1-set	e1yces1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
O	C1-set	e1yceO1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
NA [auth r]	C1-set	e1ycer1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
N	C1-set	e1yceN1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
MA [auth q]	C1-set	e1yceq1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
M	C1-set	e1yceM1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
LA [auth p]	C1-set	e1ycep1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
L	C1-set	e1yceL1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
KA [auth o]	C1-set	e1yceo1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
K	C1-set	e1yceK1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
JA [auth n]	C1-set	e1ycen1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
J	C1-set	e1yceJ1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
IA [auth m]	C1-set	e1ycem1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
I	C1-set	e1yceI1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
HA [auth l]	C1-set	e1ycel1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
H	C1-set	e1yceH1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
GA [auth k]	C1-set	e1ycek1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
G	C1-set	e1yceG1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
FA [auth j]	C1-set	e1ycej1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
F	C1-set	e1yceF1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
EA [auth i]	C1-set	e1ycei1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
E	C1-set	e1yceE1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
DA [auth h]	C1-set	e1yceh1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
D	C1-set	e1yceD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
CA [auth g]	C1-set	e1yceg1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
C	C1-set	e1yceC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
BA [auth f]	C1-set	e1ycef1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
B	C1-set	e1yceB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
AA [auth e]	C1-set	e1ycee1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: C1-set	ECOD (v295.2)
A	RGS	e1yceA1	A: alpha arrays	X: Globin-like	H: Globin-like	T: Globin-like	F: RGS	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Z [auth d]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Y [auth c]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
X [auth b]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
W [auth a]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
V	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
U	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
T	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
S	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
RA [auth v]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
R	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
QA [auth u]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Q	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
PA [auth t]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
P	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
OA [auth s]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
O	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
NA [auth r]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
N	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
MA [auth q]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
M	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
LA [auth p]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
L	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
KA [auth o]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
K	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
JA [auth n]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
J	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
IA [auth m]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
I	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
HA [auth l]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
H	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
GA [auth k]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
G	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
FA [auth j]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
F	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
EA [auth i]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
E	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
DA [auth h]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
D	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
CA [auth g]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
C	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
BA [auth f]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
B	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
AA [auth e]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
A	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	subunit c	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	Family
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR000454	ATP synthase, F0 complex, subunit C	Family
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	Rotor (c₁₁) of Na⁺-dependent F-ATP Synthase