1YCE | pdb_00001yce

Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ADPrib_exo_Tox	e1yceA1	A: alpha bundles	X: Globin-like	H: Ring-building motif I in type III secretion system	T: Ring-building motif I in type III secretion system	F: ADPrib_exo_Tox	ECOD (develop294)
AA [auth e]	Sigma_1_2	e1ycee1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
BA [auth f]	Sigma_1_2	e1ycef1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
CA [auth g]	Sigma_1_2	e1yceg1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
D	Sigma_1_2	e1yceD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
DA [auth h]	Sigma_1_2	e1yceh1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
E	Sigma_1_2	e1yceE1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
EA [auth i]	Sigma_1_2	e1ycei1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
F	Sigma_1_2	e1yceF1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
FA [auth j]	Sigma_1_2	e1ycej1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
G	Sigma_1_2	e1yceG1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
GA [auth k]	Sigma_1_2	e1ycek1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
IA [auth m]	Sigma_1_2	e1ycem1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
J	Sigma_1_2	e1yceJ1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
JA [auth n]	Sigma_1_2	e1ycen1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
K	Sigma_1_2	e1yceK1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
L	Sigma_1_2	e1yceL1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
LA [auth p]	Sigma_1_2	e1ycep1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
M	Sigma_1_2	e1yceM1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
N	Sigma_1_2	e1yceN1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
NA [auth r]	Sigma_1_2	e1ycer1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
OA [auth s]	Sigma_1_2	e1yces1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
P	Sigma_1_2	e1yceP1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
PA [auth t]	Sigma_1_2	e1ycet1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
Q	Sigma_1_2	e1yceQ1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
QA [auth u]	Sigma_1_2	e1yceu1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
R	Sigma_1_2	e1yceR1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
RA [auth v]	Sigma_1_2	e1ycev1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
S	Sigma_1_2	e1yceS1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
T	Sigma_1_2	e1yceT1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
U	Sigma_1_2	e1yceU1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
V	Sigma_1_2	e1yceV1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
W [auth a]	Sigma_1_2	e1ycea1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
X [auth b]	Sigma_1_2	e1yceb1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
Y [auth c]	Sigma_1_2	e1ycec1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
Z [auth d]	Sigma_1_2	e1yced1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
O	Sigma_1_2	e1yceO1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
MA [auth q]	Sigma_1_2	e1yceq1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
KA [auth o]	Sigma_1_2	e1yceo1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
I	Sigma_1_2	e1yceI1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
HA [auth l]	Sigma_1_2	e1ycel1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
H	Sigma_1_2	e1yceH1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
C	Sigma_1_2	e1yceC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)
B	Sigma_1_2	e1yceB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
AA [auth e]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
BA [auth f]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
CA [auth g]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
D	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
DA [auth h]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
E	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
EA [auth i]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
F	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
FA [auth j]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
G	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
GA [auth k]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
IA [auth m]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
J	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
JA [auth n]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
K	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
L	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
LA [auth p]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
M	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
N	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
NA [auth r]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
OA [auth s]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
P	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
PA [auth t]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Q	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
QA [auth u]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
R	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
RA [auth v]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
S	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
T	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
U	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
V	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
W [auth a]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
X [auth b]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Y [auth c]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Z [auth d]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
O	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
MA [auth q]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
KA [auth o]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
I	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
HA [auth l]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
H	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
C	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
B	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	subunit c	binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	localization transport monoatomic ion transport monoatomic cation transport establishment of localization sodium ion transport metal ion transport	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	Family
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR000454	ATP synthase, F0 complex, subunit C	Family
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	Rotor (c₁₁) of Na⁺-dependent F-ATP Synthase