1YOW | pdb_00001yow

human Steroidogenic Factor 1 LBD with bound Co-factor Peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8071634	3001442	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1yowA1	A: Globin-like	X: Globin-like	H: Globin-like	T: RGS	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Steroidogenic factor 1	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding phospholipid binding lipid binding DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding phospholipid binding lipid binding transcription factor binding transcription coregulator binding protein binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity nuclear receptor activity molecular transducer activity signaling receptor activity ligand-modulated transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding enzyme binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development system development regulation of developmental process negative regulation of gonad development regulation of gonad development regulation of reproductive process negative regulation of biological process development of primary female sexual characteristics regulation of female gonad development regulation of multicellular organismal process regulation of biological process regulation of multicellular organismal development negative regulation of female gonad development negative regulation of developmental process female gonad development biological regulation female sex differentiation negative regulation of reproductive process negative regulation of multicellular organismal process cellular developmental process epithelial cell differentiation Sertoli cell differentiation cell differentiation epithelium development tissue development cellular process regulation of biosynthetic process regulation of steroid biosynthetic process regulation of cellular process regulation of lipid metabolic process steroid metabolic process regulation of steroid metabolic process lipid biosynthetic process primary metabolic process regulation of primary metabolic process biosynthetic process metabolic process regulation of lipid biosynthetic process steroid biosynthetic process regulation of metabolic process lipid metabolic process Leydig cell differentiation sex determination primary sex determination maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle maintenance of protein localization in organelle intracellular protein localization male sex determination positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process positive regulation of cellular process RNA metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II cellular response to stimulus response to stimulus signaling response to endogenous stimulus hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical signal transduction cellular response to hormone stimulus positive regulation of developmental process positive regulation of male gonad development regulation of male gonad development positive regulation of reproductive process positive regulation of gonad development positive regulation of multicellular organismal process regulation of hormone levels regulation of biological quality hormone metabolic process intracellular signal transduction calcium-mediated signaling intracellular signaling cassette calcineurin-mediated signaling adrenal gland development endocrine system development gland development response to gonadotropin-releasing hormone response to peptide hormone response to oxygen-containing compound response to nitrogen compound regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of DNA-templated transcription positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process rhythmic process ovulation cycle process luteinization multicellular organismal reproductive process ovulation cycle	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm cytosol membrane-enclosed lumen RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
B	TIF2 peptide	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
A	IPR001723	Nuclear hormone receptor	Family
A	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
A	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
A	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily
A	IPR016355	Nuclear hormone receptor family 5-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q13285	46,XY complete gonadal dysgenesis primary ovarian failure premature ovarian failure 7 46 XX gonadal dysgenesis 46,XY sex reversal 3 spermatogenic failure 8 46,XY partial gonadal dysgenesis endometriosis ovarian cancer gonadal dysgenesis male infertility 46,XX sex reversal 4 46,XY disorder of sex development hypospadias male infertility with azoospermia or oligozoospermia due to single gene mutation 46,XY complete gonadal dysgenesis primary ovarian failure premature ovarian failure 7 46 XX gonadal dysgenesis 46,XY sex reversal 3 spermatogenic failure 8 46,XY partial gonadal dysgenesis endometriosis ovarian cancer gonadal dysgenesis male infertility 46,XX sex reversal 4 46,XY disorder of sex development hypospadias male infertility with azoospermia or oligozoospermia due to single gene mutation Malignant neoplasm of ovary premature menopause psoriasis 46,XX testicular disorder of sex development azoospermia intellectual disability 46,XX ovotesticular disorder of sex development adrenocortical insufficiency ovarian neoplasm X-linked adrenal hypoplasia congenita atrial fibrillation

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.