Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth 3]SCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8068021 4003466 SCOP2 (2022-06-29)
C [auth 3]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8068022 3000918 SCOP2 (2022-06-29)
F [auth I]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054755 3000071 SCOP2B (2022-06-29)
F [auth I]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054735 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Rhv_5e1z7z11 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
B [auth 2]Rhv_1e1z7z21 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
C [auth 3]Rhv_3e1z7z31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
F [auth I]ICAM_Ne1z7zI9 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: ICAM_NECOD (1.6)
F [auth I]I-set_4e1z7zI7 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-set_4ECOD (1.6)
F [auth I]C1-set_likee1z7zI6 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_likeECOD (1.6)
F [auth I]C1-sete1z7zI1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
F [auth I]PF21146ICAM-1/3/5, D2 domain (ICAM1_3_5_D2)ICAM-1/3/5, D2 domainICAMs promote intercellular adhesion and are important in inflammation, immune responses and in intracellular signalling events [1-5]. They belong to the Ig-like superfamily and differ in their cell expression patterns and numbers of Ig-like domains ...ICAMs promote intercellular adhesion and are important in inflammation, immune responses and in intracellular signalling events [1-5]. They belong to the Ig-like superfamily and differ in their cell expression patterns and numbers of Ig-like domains (ICAM-2 and ICAM-4 have two, ICAM-1 and ICAM-3 have five and ICAM-5 has nine [5]). Domain 2 (D2), represented in this entry, is most similar between ICAM-1, 3 and 5 [5].
Domain
F [auth I]PF13895Immunoglobulin domain (Ig_2)Immunoglobulin domainThis domain contains immunoglobulin-like domains.Domain
F [auth I]PF03921Intercellular adhesion molecule (ICAM), N-terminal domain (ICAM_N)Intercellular adhesion molecule (ICAM), N-terminal domainICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This famil ...ICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This family is a family that is part of the Ig superfamily and is therefore related to the family ig (Pfam:PF00047).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]human coxsackievirus A21
B [auth 2]human coxsackievirus A21
C [auth 3]human coxsackievirus A21
D [auth 4]human coxsackievirus A21
E [auth 5]human coxsackievirus A21---
F [auth I]Intercellular adhesion molecule-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth 1]IPR002527Picornavirus 2B proteinDomain
A [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth 1]IPR003138Picornavirus coat protein VP4Family
A [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth 1]IPR001676Picornavirus capsidDomain
A [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 1]IPR000081Peptidase C3, picornavirus core protein 2ADomain
A [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth 1]IPR014838Poliovirus 3A protein-likeDomain
A [auth 1]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 2]IPR002527Picornavirus 2B proteinDomain
B [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 2]IPR003138Picornavirus coat protein VP4Family
B [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 2]IPR001676Picornavirus capsidDomain
B [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2]IPR014838Poliovirus 3A protein-likeDomain
B [auth 2]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 3]IPR002527Picornavirus 2B proteinDomain
C [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 3]IPR003138Picornavirus coat protein VP4Family
C [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 3]IPR001676Picornavirus capsidDomain
C [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3]IPR014838Poliovirus 3A protein-likeDomain
C [auth 3]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth 4]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 4]IPR002527Picornavirus 2B proteinDomain
D [auth 4]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 4]IPR003138Picornavirus coat protein VP4Family
D [auth 4]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 4]IPR001676Picornavirus capsidDomain
D [auth 4]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 4]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth 4]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 4]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 4]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 4]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 4]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 4]IPR014838Poliovirus 3A protein-likeDomain
D [auth 4]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth 4]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 4]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 4]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth I]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
F [auth I]IPR048679Intercellular adhesion molecule 1/3/5, D2 domainDomain
F [auth I]IPR003599Immunoglobulin domain subtypeDomain
F [auth I]IPR047012Intercellular adhesion molecule/vascular cell adhesion moleculeFamily
F [auth I]IPR003988Intercellular adhesion moleculeDomain
F [auth I]IPR003987Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminalDomain
F [auth I]IPR013783Immunoglobulin-like foldHomologous Superfamily
F [auth I]IPR013768Intercellular adhesion molecule, N-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth I]PharosP05362