1ZAQ | pdb_00001zaq

FOURTH EGF-LIKE DOMAIN OF THROMBOMODULIN, NMR, 12 STRUCTURES

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1zaqa_	Small proteins	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin	EGF-type module	Thrombomodulin, different EGF-like domains	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	EGF/Laminin-like	8038333	3000412	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1zaqA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: EGF_CA	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	THROMBOMODULIN	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding molecular transducer activity signaling receptor activity transmembrane signaling receptor activity	multicellular organismal process regulation of body fluid levels regulation of cellular process response to stimulus regulation of response to external stimulus negative regulation of biological process regulation of cell activation negative regulation of platelet activation regulation of response to wounding regulation of coagulation response to stress regulation of response to stress negative regulation of cellular process coagulation multicellular organismal process regulation of body fluid levels regulation of cellular process response to stimulus regulation of response to external stimulus negative regulation of biological process regulation of cell activation negative regulation of platelet activation regulation of response to wounding regulation of coagulation response to stress regulation of response to stress negative regulation of cellular process coagulation regulation of multicellular organismal process regulation of biological quality response to wounding regulation of hemostasis wound healing regulation of biological process negative regulation of response to stimulus negative regulation of wound healing regulation of blood coagulation negative regulation of blood coagulation biological regulation hemostasis cell activation response to external stimulus negative regulation of response to wounding blood coagulation negative regulation of cell activation negative regulation of hemostasis regulation of platelet activation negative regulation of coagulation regulation of response to stimulus negative regulation of response to external stimulus regulation of wound healing cellular process negative regulation of multicellular organismal process platelet activation multi-multicellular organism process reproductive process female pregnancy multi-organism reproductive process blood coagulation, common pathway protein maturation blood coagulation, fibrin clot formation protein metabolic process protein activation cascade primary metabolic process gene expression macromolecule biosynthetic process biosynthetic process metabolic process macromolecule metabolic process response to X-ray response to ionizing radiation response to radiation response to abiotic stimulus positive regulation of coagulation positive regulation of biological process positive regulation of blood coagulation positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of hemostasis positive regulation of response to wounding positive regulation of wound healing fibrinolysis regulation of fibrinolysis positive regulation of multicellular organismal process negative regulation of fibrinolysis response to chemical response to organophosphorus response to oxygen-containing compound response to nitrogen compound response to purine-containing compound response to cAMP proteolysis zymogen activation protein processing biological process involved in interspecies interaction between organisms response to lipid response to other organism response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane apicolateral plasma membrane plasma membrane region protein-containing complex catalytic complex peptidase complex endopeptidase complex serine-type endopeptidase complex cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane apicolateral plasma membrane plasma membrane region protein-containing complex catalytic complex peptidase complex endopeptidase complex serine-type endopeptidase complex serine-type peptidase complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure vacuole intracellular membrane-bounded organelle intracellular organelle bounding membrane of organelle organelle cytoplasm organelle membrane extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
A	IPR052126	Spindle_Organization_and_Thrombomodulin	Family
A	IPR057350	Thrombomodulin-like domain	Domain
A	IPR016187	C-type lectin fold	Homologous Superfamily
A	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A	IPR026823	Complement Clr-like EGF domain	Domain
A	IPR001304	C-type lectin-like	Domain
A	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A	IPR000742	EGF-like domain	Domain
A	IPR015149	Thrombomodulin-like, EGF-like	Domain
A	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P07204	thrombophilia atypical hemolytic-uremic syndrome thrombomodulin-related bleeding disorder thrombotic thrombocytopenic purpura acute promyelocytic leukemia adult acute respiratory distress syndrome pulmonary embolism myocardial infarction hemolytic-uremic syndrome neuropathy, painful disseminated intravascular coagulation Liver Cirrhosis, Experimental atypical hemolytic-uremic syndrome with thrombomodulin anomaly gastric cancer thrombotic disease thrombophilia atypical hemolytic-uremic syndrome thrombomodulin-related bleeding disorder thrombotic thrombocytopenic purpura acute promyelocytic leukemia adult acute respiratory distress syndrome pulmonary embolism myocardial infarction hemolytic-uremic syndrome neuropathy, painful disseminated intravascular coagulation Liver Cirrhosis, Experimental atypical hemolytic-uremic syndrome with thrombomodulin anomaly gastric cancer thrombotic disease vascular disease interstitial cystitis lung cancer pancreatic intraductal papillary-mucinous carcinoma breast carcinoma psoriasis hemolytic anemia hereditary diffuse gastric adenocarcinoma lung carcinoma adenoma medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia congenital thrombotic thrombocytopenic purpura ulcerative colitis lung adenocarcinoma adrenal cortex carcinoma ovarian cancer breast cancer pituitary cancer cystic fibrosis gastric neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.