1ZP3
E. coli Methylenetetrahydrofolate Reductase (oxidized)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1zp3a_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | FAD-linked oxidoreductase | Methylenetetrahydrofolate reductase | Methylenetetrahydrofolate reductase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
C | d1zp3c_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | FAD-linked oxidoreductase | Methylenetetrahydrofolate reductase | Methylenetetrahydrofolate reductase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1zp3b_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | FAD-linked oxidoreductase | Methylenetetrahydrofolate reductase | Methylenetetrahydrofolate reductase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | FAD-linked oxidoreductase | 8043872 | 3000663 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | FAD-linked oxidoreductase | 8043872 | 3000663 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FAD-linked oxidoreductase | 8043872 | 3000663 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MTHFR | e1zp3A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: MTHFR | ECOD (1.6) |
C | MTHFR | e1zp3C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: MTHFR | ECOD (1.6) |
B | MTHFR | e1zp3B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: MTHFR | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.220 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | CATH (4.3.0) | |
C | 3.20.20.220 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | CATH (4.3.0) | |
B | 3.20.20.220 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02219 | Methylenetetrahydrofolate reductase (MTHFR) | Methylenetetrahydrofolate reductase | This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known [1] to be a TIM barrel. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003171 | Methylenetetrahydrofolate reductase-like | Family | |
IPR029041 | FAD-linked oxidoreductase-like | Homologous Superfamily | |
IPR004620 | 5,10-methylenetetrahydrofolate reductase | Family |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
methylenetetrahydrofolate reductase [NAD(P)H] M-CSA #120 | E. coli methylenetetrahydrofolate reductase (MTHFR) catalyses the NADH-dependent reduction of 5,10-methylenetetrahydrofolate (CH2-H4folate) to 5 methyltetrahydrofolate (CH3-H4folate) using the cofactor flavin adenine dinucleotide (FAD) as an intermediate hydride acceptor and donor. MTHFR is the only route of CH3-H4folate which is used by methionine synthase to convert homocysteine to methionine. E. coli MTHFR is a homotetramer that dissociates into dimers on dilution. Its catalytic domain is a (beta-alpha)8 barrel. Bacterial MTHFR enzymes are simpler than mammalian MTHFR in that the catatlytic domain constitutes the entire sequence, with no regulatory sequence present. | Defined by 5 residues: SER:A-26GLU:A-28ASP:A-120PHE:A-223HIS:A-273 | EC: 1.7.99.5 (PDB Primary Data) EC: 1.5.1.54 (UniProt) |