Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1r4ma_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) Amyloid beta precursor protein-binding protein 1, APPBP1 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
J [auth G]d1r4mg_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) Amyloid beta precursor protein-binding protein 1, APPBP1 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth C]d1r4mc_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) Amyloid beta precursor protein-binding protein 1, APPBP1 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth E]d1r4me_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) Amyloid beta precursor protein-binding protein 1, APPBP1 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1r4mb_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) UBA3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth D]d1r4md_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) UBA3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth F]d1r4mf_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) UBA3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth H]d1r4mh_ Alpha and beta proteins (a/b) Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins Ubiquitin activating enzymes (UBA) UBA3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth I]d1r4mi_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Nedd8 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth J]d1r4mj_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Nedd8 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth K]d1r4mk_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Nedd8 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld1r4ml_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Nedd8 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003548 3000140 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDuplicated CC (catalytic cysteine) domain-like 8003546 3000141 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003548 3000140 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyDuplicated CC (catalytic cysteine) domain-like 8003546 3000141 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyDuplicated CC (catalytic cysteine) domain-like 8003546 3000141 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003548 3000140 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003548 3000140 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyDuplicated CC (catalytic cysteine) domain-like 8003546 3000141 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003537 3000112 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003549 3000140 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyE2 binding domain-like 8003941 3000147 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003549 3000140 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyE2 binding domain-like 8003941 3000147 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyE2 binding domain-like 8003941 3000147 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003549 3000140 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyCC (catalytic cysteine) domain-like 8003549 3000140 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyE2 binding domain-like 8003941 3000147 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins 8003542 3000112 SCOP2B (2022-06-29)
C [auth I]SCOP2B SuperfamilyUbiquitin-like 8034470 3000157 SCOP2B (2022-06-29)
F [auth J]SCOP2B SuperfamilyUbiquitin-like 8034470 3000157 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyUbiquitin-like 8034470 3000157 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyUbiquitin-like 8034470 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AThiF_2,APPBP1_RUBe1r4mA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_2,APPBP1_RUBECOD (1.6)
J [auth G]ThiF_2,APPBP1_RUBe1r4mG1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_2,APPBP1_RUBECOD (1.6)
D [auth C]ThiF_2,APPBP1_RUBe1r4mC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_2,APPBP1_RUBECOD (1.6)
G [auth E]ThiF_2,APPBP1_RUBe1r4mE1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_2,APPBP1_RUBECOD (1.6)
BUBA_e1_thiolCyse1r4mB1 A: alpha arraysX: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)T: Catalytic cysteine domain in ubiquitin-activating enzymeF: UBA_e1_thiolCysECOD (1.6)
BE2_binde1r4mB3 A: a+b two layersX: beta-GraspH: E2-binding domain of E1 (From Topology)T: E2-binding domain of E1F: E2_bindECOD (1.6)
BThiF_1e1r4mB4 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_1ECOD (1.6)
E [auth D]UBA_e1_thiolCyse1r4mD1 A: alpha arraysX: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)T: Catalytic cysteine domain in ubiquitin-activating enzymeF: UBA_e1_thiolCysECOD (1.6)
E [auth D]E2_binde1r4mD3 A: a+b two layersX: beta-GraspH: E2-binding domain of E1 (From Topology)T: E2-binding domain of E1F: E2_bindECOD (1.6)
E [auth D]ThiF_1e1r4mD4 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_1ECOD (1.6)
H [auth F]UBA_e1_thiolCyse1r4mF2 A: alpha arraysX: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)T: Catalytic cysteine domain in ubiquitin-activating enzymeF: UBA_e1_thiolCysECOD (1.6)
H [auth F]E2_binde1r4mF3 A: a+b two layersX: beta-GraspH: E2-binding domain of E1 (From Topology)T: E2-binding domain of E1F: E2_bindECOD (1.6)
H [auth F]ThiF_1e1r4mF4 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_1ECOD (1.6)
K [auth H]UBA_e1_thiolCyse1r4mH1 A: alpha arraysX: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology)T: Catalytic cysteine domain in ubiquitin-activating enzymeF: UBA_e1_thiolCysECOD (1.6)
K [auth H]E2_binde1r4mH3 A: a+b two layersX: beta-GraspH: E2-binding domain of E1 (From Topology)T: E2-binding domain of E1F: E2_bindECOD (1.6)
K [auth H]ThiF_1e1r4mH4 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_1ECOD (1.6)
C [auth I]ubiquitin_4e1r4mI1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_4ECOD (1.6)
F [auth J]ubiquitin_4e1r4mJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_4ECOD (1.6)
I [auth K]ubiquitin_4e1r4mK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_4ECOD (1.6)
Lubiquitin_4e1r4mL1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_4ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
J [auth G]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D [auth C]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G [auth E]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B1.10.10.520 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ubiquitin activating enzymes (Uba3). Chain: B, domain 2CATH (4.3.0)
B3.10.20.260 Alpha Beta Roll Ubiquitin-like (UB roll) NEDD8-activating enzyme E1, catalytic subunitCATH (4.3.0)
E [auth D]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E [auth D]1.10.10.520 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ubiquitin activating enzymes (Uba3). Chain: B, domain 2CATH (4.3.0)
E [auth D]3.10.20.260 Alpha Beta Roll Ubiquitin-like (UB roll) NEDD8-activating enzyme E1, catalytic subunitCATH (4.3.0)
H [auth F]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H [auth F]1.10.10.520 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ubiquitin activating enzymes (Uba3). Chain: B, domain 2CATH (4.3.0)
H [auth F]3.10.20.260 Alpha Beta Roll Ubiquitin-like (UB roll) NEDD8-activating enzyme E1, catalytic subunitCATH (4.3.0)
K [auth H]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
K [auth H]1.10.10.520 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ubiquitin activating enzymes (Uba3). Chain: B, domain 2CATH (4.3.0)
K [auth H]3.10.20.260 Alpha Beta Roll Ubiquitin-like (UB roll) NEDD8-activating enzyme E1, catalytic subunitCATH (4.3.0)
C [auth I]3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
F [auth J]3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
I [auth K]3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
L3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth C],
G [auth E],
J [auth G]
PF00899ThiF family (ThiF)ThiF familyThis domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3].Domain
B,
E [auth D],
H [auth F],
K [auth H]
PF00899ThiF family (ThiF)ThiF familyThis domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3].Domain
B,
E [auth D],
H [auth F],
K [auth H]
PF08825E2 binding domain (E2_bind)E2 binding domainE1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The domain resembles ubiquitin, and recruits the catalytic core of the E2 enz ...E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The domain resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains [1].
Domain
C [auth I],
F [auth J],
I [auth K],
L
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth C],
G [auth E],
J [auth G]
amyloid beta precursor protein-binding protein 1
B,
E [auth D],
H [auth F],
K [auth H]
ubiquitin-activating enzyme E1C
C [auth I],
F [auth J],
I [auth K],
L
Ubiquitin-like protein NEDD8

InterPro: Protein Family Classification InterPro Database Homepage