1R4M
APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003548 | 3000140 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Duplicated CC (catalytic cysteine) domain-like | 8003546 | 3000141 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003548 | 3000140 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | Duplicated CC (catalytic cysteine) domain-like | 8003546 | 3000141 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Duplicated CC (catalytic cysteine) domain-like | 8003546 | 3000141 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003548 | 3000140 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003548 | 3000140 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Duplicated CC (catalytic cysteine) domain-like | 8003546 | 3000141 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003537 | 3000112 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003549 | 3000140 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | E2 binding domain-like | 8003941 | 3000147 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003549 | 3000140 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | E2 binding domain-like | 8003941 | 3000147 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | E2 binding domain-like | 8003941 | 3000147 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003549 | 3000140 | SCOP2B (2022-06-29) |
K [auth H] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003549 | 3000140 | SCOP2B (2022-06-29) |
K [auth H] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
K [auth H] | SCOP2B Superfamily | E2 binding domain-like | 8003941 | 3000147 | SCOP2B (2022-06-29) |
K [auth H] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003542 | 3000112 | SCOP2B (2022-06-29) |
C [auth I] | SCOP2B Superfamily | Ubiquitin-like | 8034470 | 3000157 | SCOP2B (2022-06-29) |
F [auth J] | SCOP2B Superfamily | Ubiquitin-like | 8034470 | 3000157 | SCOP2B (2022-06-29) |
I [auth K] | SCOP2B Superfamily | Ubiquitin-like | 8034470 | 3000157 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Ubiquitin-like | 8034470 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ThiF_2,APPBP1_RUB | e1r4mA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_2,APPBP1_RUB | ECOD (1.6) |
J [auth G] | ThiF_2,APPBP1_RUB | e1r4mG1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_2,APPBP1_RUB | ECOD (1.6) |
D [auth C] | ThiF_2,APPBP1_RUB | e1r4mC1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_2,APPBP1_RUB | ECOD (1.6) |
G [auth E] | ThiF_2,APPBP1_RUB | e1r4mE1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_2,APPBP1_RUB | ECOD (1.6) |
B | UBA_e1_thiolCys | e1r4mB1 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
B | E2_bind | e1r4mB3 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E2_bind | ECOD (1.6) |
B | ThiF_1 | e1r4mB4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
E [auth D] | UBA_e1_thiolCys | e1r4mD1 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
E [auth D] | E2_bind | e1r4mD3 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E2_bind | ECOD (1.6) |
E [auth D] | ThiF_1 | e1r4mD4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
H [auth F] | UBA_e1_thiolCys | e1r4mF2 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
H [auth F] | E2_bind | e1r4mF3 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E2_bind | ECOD (1.6) |
H [auth F] | ThiF_1 | e1r4mF4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
K [auth H] | UBA_e1_thiolCys | e1r4mH1 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
K [auth H] | E2_bind | e1r4mH3 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E2_bind | ECOD (1.6) |
K [auth H] | ThiF_1 | e1r4mH4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
C [auth I] | ubiquitin_4 | e1r4mI1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_4 | ECOD (1.6) |
F [auth J] | ubiquitin_4 | e1r4mJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_4 | ECOD (1.6) |
I [auth K] | ubiquitin_4 | e1r4mK1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_4 | ECOD (1.6) |
L | ubiquitin_4 | e1r4mL1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth C], G [auth E], J [auth G] | PF00899 | ThiF family (ThiF) | ThiF family | This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3]. | Domain |
B, E [auth D], H [auth F], K [auth H] | PF00899 | ThiF family (ThiF) | ThiF family | This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3]. | Domain |
B, E [auth D], H [auth F], K [auth H] | PF08825 | E2 binding domain (E2_bind) | E2 binding domain | E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The domain resembles ubiquitin, and recruits the catalytic core of the E2 enz ... | Domain |
C [auth I], F [auth J], I [auth K], L | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A, D [auth C], G [auth E], J [auth G] | Q13564 | : |
B, E [auth D], H [auth F], K [auth H] | Q8TBC4 | : |
C [auth I], F [auth J], I [auth K], L | Q15843 | :