2A6O | pdb_00002a6o

Crystal Structure of the ISHp608 Transposase in Complex with Stem-loop DNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d2a6oa_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	ISHP608 transposase	(Helicobacter pylori ) [TaxId: 210 ],	SCOPe (2.08)
D [auth B]	d2a6ob_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	ISHP608 transposase	(Helicobacter pylori ) [TaxId: 210 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Transposase IS200-like	8037527	3001347	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Transposase IS200-like	8037527	3001347	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	ABM	e2a6oA1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: ABM	ECOD (v294.1)
D [auth B]	ABM	e2a6oB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: ABM	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth A]	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
D [auth B]	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth D]	5'-D(CPCPCPCPTPAPGPCPTPTPTPAPGPCPTPAPTPGPGPGPGPA)-3'	-	-	-
C [auth A], D [auth B]	ISHp608 Transposase	DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding transposase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity	nucleobase-containing compound metabolic process DNA recombination cellular process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process transposition DNA transposition nucleic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B]	IPR036515	Transposase IS200-like superfamily	Homologous Superfamily
C [auth A], D [auth B]	IPR002686	Transposase IS200-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.