2AVV
Kinetics, stability, and structural changes in high resolution crystal structures of HIV-1 protease with drug resistant mutations L24I, I50V, and G73S
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2avva_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | Human immunodeficiency virus type 1 protease | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
B | d2avvb_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | Human immunodeficiency virus type 1 protease | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
C [auth D] | d2avvd_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | Human immunodeficiency virus type 1 protease | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
D [auth E] | d2avve_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | Human immunodeficiency virus type 1 protease | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Acid proteases | 8072241 | 3001059 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Acid proteases | 8072241 | 3001059 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Acid proteases | 8072241 | 3001059 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Acid proteases | 8072241 | 3001059 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RVP | e2avvA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
B | RVP | e2avvB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
C [auth D] | RVP | e2avvD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
D [auth E] | RVP | e2avvE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
B | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
C [auth D] | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
D [auth E] | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth D], D [auth E] | PF00077 | Retroviral aspartyl protease (RVP) | Retroviral aspartyl protease | Single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a ... | Domain |