Crystal Structure of Photosystem II from Thermosynechococcus elongatus
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| T [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032743 | 3001674 | SCOP2B (2022-06-29) |
| B | SCOP2 Family | Photosystem II antenna protein-like | 8020363 | 4002735 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Photosystem II antenna protein-like | 8032743 | 3001674 | SCOP2 (2022-06-29) |
| I [auth J] | SCOP2 Family | PsbJ-like | 8020375 | 4002642 | SCOP2 (2022-06-29) |
| I [auth J] | SCOP2 Superfamily | Photosystem II reaction center protein J, PsbJ | 8032755 | 3001534 | SCOP2 (2022-06-29) |
| AA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8032755 | 3001534 | SCOP2B (2022-06-29) |
| Z [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8032754 | 3001590 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2 Family | PsbI-like | 8020374 | 4002676 | SCOP2 (2022-06-29) |
| H [auth I] | SCOP2 Superfamily | Photosystem II reaction center protein I, PsbI | 8032754 | 3001590 | SCOP2 (2022-06-29) |
| Y [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8032753 | 3001547 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2 Family | PsbH-like | 8020373 | 4002649 | SCOP2 (2022-06-29) |
| G [auth H] | SCOP2 Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8032753 | 3001547 | SCOP2 (2022-06-29) |
| X [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8032752 | 3001602 | SCOP2B (2022-06-29) |
| F | SCOP2 Family | Cytochrome b559 subunits | 8020372 | 4002681 | SCOP2 (2022-06-29) |
| F | SCOP2 Superfamily | Cytochrome b559 subunits | 8032752 | 3001602 | SCOP2 (2022-06-29) |
| W [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8032749 | 3001602 | SCOP2B (2022-06-29) |
| E | SCOP2 Family | Cytochrome b559 subunits | 8020369 | 4002681 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Cytochrome b559 subunits | 8032749 | 3001602 | SCOP2 (2022-06-29) |
| V [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8032750 | 3000736 | SCOP2B (2022-06-29) |
| D | SCOP2 Family | Bacterial photosystem II reaction centre, L and M subunits | 8020370 | 4002035 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8032750 | 3000736 | SCOP2 (2022-06-29) |
| U [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032746 | 3001674 | SCOP2B (2022-06-29) |
| C | SCOP2 Family | Photosystem II antenna protein-like | 8020366 | 4002735 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | Photosystem II antenna protein-like | 8032746 | 3001674 | SCOP2 (2022-06-29) |
| R [auth Z] | SCOP2 Family | PsbZ-like | 8020390 | 4002701 | SCOP2 (2022-06-29) |
| R [auth Z] | SCOP2 Superfamily | PsbZ-like | 8032770 | 3001624 | SCOP2 (2022-06-29) |
| JA [auth z] | SCOP2B Superfamily | PsbZ-like | 8032770 | 3001624 | SCOP2B (2022-06-29) |
| P [auth V] | SCOP2B Superfamily | Cytochrome c | 8036565 | 3000815 | SCOP2B (2022-06-29) |
| HA [auth v] | SCOP2B Superfamily | Cytochrome c | 8036565 | 3000815 | SCOP2B (2022-06-29) |
| O [auth U] | SCOP2 Family | PsbU-like | 8020388 | 4001403 | SCOP2 (2022-06-29) |
| O [auth U] | SCOP2 Superfamily | PsbU/PolX domain-like | 8032768 | 3000893 | SCOP2 (2022-06-29) |
| GA [auth u] | SCOP2B Superfamily | PsbU/PolX domain-like | 8032768 | 3000893 | SCOP2B (2022-06-29) |
| N [auth T] | SCOP2 Family | PsbT-like | 8020389 | 4002656 | SCOP2 (2022-06-29) |
| N [auth T] | SCOP2 Superfamily | Photosystem II reaction center protein T, PsbT | 8032769 | 3001561 | SCOP2 (2022-06-29) |
| FA [auth t] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8032769 | 3001561 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2 Family | PsbO-like | 8020385 | 4002770 | SCOP2 (2022-06-29) |
| M [auth O] | SCOP2 Superfamily | OMPA barrel-like | 8032765 | 3000208 | SCOP2 (2022-06-29) |
| EA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8032765 | 3000208 | SCOP2B (2022-06-29) |
| L [auth M] | SCOP2 Family | PsbM-like | 8020382 | 4002664 | SCOP2 (2022-06-29) |
| L [auth M] | SCOP2 Superfamily | Photosystem II reaction center protein M, PsbM | 8032762 | 3001573 | SCOP2 (2022-06-29) |
| DA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8032762 | 3001573 | SCOP2B (2022-06-29) |
| K [auth L] | SCOP2 Family | PsbL-like | 8020379 | 4002634 | SCOP2 (2022-06-29) |
| K [auth L] | SCOP2 Superfamily | Photosystem II reaction center protein L, PsbL | 8032759 | 3001523 | SCOP2 (2022-06-29) |
| CA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8032759 | 3001523 | SCOP2B (2022-06-29) |
| J [auth K] | SCOP2 Family | PsbK-like | 8020377 | 4002673 | SCOP2 (2022-06-29) |
| J [auth K] | SCOP2 Superfamily | Photosystem II reaction center protein K, PsbK | 8032757 | 3001585 | SCOP2 (2022-06-29) |
| BA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8032757 | 3001585 | SCOP2B (2022-06-29) |
| S [auth a] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8032741 | 3000736 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Bacterial photosystem II reaction centre, L and M subunits | 8020361 | 4002035 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8032741 | 3000736 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| T [auth b] | PSII_1st | e2axtb1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PSII_1st | ECOD (1.6) |
| T [auth b] | PSII_2nd | e2axtb2 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PSII_2nd | ECOD (1.6) |
| B | PSII_1st | e2axtB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PSII_1st | ECOD (1.6) |
| B | PSII_2nd | e2axtB3 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PSII_2nd | ECOD (1.6) |
| I [auth J] | PsbJ | e2axtJ1 | A: extended segments | X: Photosystem II reaction center protein J, PsbJ (From Topology) | H: Photosystem II reaction center protein J, PsbJ (From Topology) | T: Photosystem II reaction center protein J, PsbJ | F: PsbJ | ECOD (1.6) |
| AA [auth j] | PsbJ | e2axtj1 | A: extended segments | X: Photosystem II reaction center protein J, PsbJ (From Topology) | H: Photosystem II reaction center protein J, PsbJ (From Topology) | T: Photosystem II reaction center protein J, PsbJ | F: PsbJ | ECOD (1.6) |
| Z [auth i] | PsbI | e2axti1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PsbI | ECOD (1.6) |
| H [auth I] | PsbI | e2axtI1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PsbI | ECOD (1.6) |
| Y [auth h] | PsbH | e2axth1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PsbH | ECOD (1.6) |
| G [auth H] | PsbH | e2axtH1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PsbH | ECOD (1.6) |
| X [auth f] | Cytochrom_B559 | e2axtf1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: Cytochrom_B559 | ECOD (1.6) |
| F | Cytochrom_B559 | e2axtF1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: Cytochrom_B559 | ECOD (1.6) |
| W [auth e] | Cytochrom_B559a | e2axte1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: Cytochrom_B559a | ECOD (1.6) |
| E | Cytochrom_B559a | e2axtE1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: Cytochrom_B559a | ECOD (1.6) |
| V [auth d] | Photo_RC | e2axtd1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
| D | Photo_RC | e2axtD1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
| U [auth c] | PSII_1st | e2axtc1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PSII_1st | ECOD (1.6) |
| C | PSII_1st | e2axtC1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PSII_1st | ECOD (1.6) |
| R [auth Z] | Ycf9 | e2axtZ1 | A: extended segments | X: PsbZ-like (From Topology) | H: PsbZ-like (From Topology) | T: PsbZ-like | F: Ycf9 | ECOD (1.6) |
| JA [auth z] | Ycf9 | e2axtz1 | A: extended segments | X: PsbZ-like (From Topology) | H: PsbZ-like (From Topology) | T: PsbZ-like | F: Ycf9 | ECOD (1.6) |
| P [auth V] | Cytochrom_C550 | e2axtV1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrom_C550 | ECOD (1.6) |
| HA [auth v] | Cytochrom_C550 | e2axtv1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrom_C550 | ECOD (1.6) |
| O [auth U] | PsbU | e2axtU1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PsbU | ECOD (1.6) |
| GA [auth u] | PsbU | e2axtu1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PsbU | ECOD (1.6) |
| N [auth T] | PsbT | e2axtT1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PsbT | ECOD (1.6) |
| FA [auth t] | PsbT | e2axtt1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PsbT | ECOD (1.6) |
| M [auth O] | MSP | e2axtO1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: MSP | ECOD (1.6) |
| EA [auth o] | MSP | e2axto1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: MSP | ECOD (1.6) |
| L [auth M] | PsbM | e2axtM1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: PsbM | ECOD (1.6) |
| DA [auth m] | PsbM | e2axtm1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: PsbM | ECOD (1.6) |
| K [auth L] | PsbL | e2axtL1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PsbL | ECOD (1.6) |
| CA [auth l] | PsbL | e2axtl1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PsbL | ECOD (1.6) |
| J [auth K] | PsbK | e2axtK1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PsbK | ECOD (1.6) |
| BA [auth k] | PsbK | e2axtk1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PsbK | ECOD (1.6) |
| S [auth a] | Photo_RC | e2axta1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
| A | Photo_RC | e2axtA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth I], Z [auth i] | PF02532 | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI) | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) | - | Family |
| G [auth H], Y [auth h] | PF00737 | Photosystem II 10 kDa phosphoprotein (PsbH) | Photosystem II 10 kDa phosphoprotein | - | Family |
| E, W [auth e] | PF00283 | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559) | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits | - | Family |
| E, W [auth e] | PF00284 | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a) | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | - | Family |
| D, V [auth d] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
| C, U [auth c] | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
| JA [auth z], R [auth Z] | PF01737 | YCF9 (Ycf9) | YCF9 | - | Family |
| HA [auth v], P [auth V] | PF14495 | Cytochrome c-550 domain (Cytochrom_C550) | Cytochrome c-550 domain | This domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1]. | Domain |
| GA [auth u], O [auth U] | PF06514 | Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU) | Photosystem II 12 kDa extrinsic protein (PsbU) | - | Family |
| FA [auth t], N [auth T] | PF01405 | Photosystem II reaction centre T protein (PsbT) | Photosystem II reaction centre T protein | The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ... | Domain |
| DA [auth m], L [auth M] | PF05151 | Photosystem II reaction centre M protein (PsbM) (PsbM) | Photosystem II reaction centre M protein (PsbM) | - | Family |
| CA [auth l], K [auth L] | PF02419 | PsbL protein (PsbL) | PsbL protein | - | Family |
| BA [auth k], J [auth K] | PF02533 | Photosystem II 4 kDa reaction centre component (PsbK) | Photosystem II 4 kDa reaction centre component | - | Family |
| A, S [auth a] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














