2FIM

Structure of the C-terminal domain of Human Tubby-like protein 1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2fima_	Alpha and beta proteins (a+b)	Tubby C-terminal domain-like	Tubby C-terminal domain-like	Transcriptional factor tubby, C-terminal domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2fimb_	Alpha and beta proteins (a+b)	Tubby C-terminal domain-like	Tubby C-terminal domain-like	Transcriptional factor tubby, C-terminal domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Transcriptional factor tubby, C-terminal domain	8081767	4001052	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tubby C-terminal domain-like	8081768	3000593	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Tubby C-terminal domain-like	8081768	3000593	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tub	e2fimA1	A: beta barrels	X: Transcriptional factor tubby, C-terminal domain (From Topology)	H: Transcriptional factor tubby, C-terminal domain (From Topology)	T: Transcriptional factor tubby, C-terminal domain	F: Tub	ECOD (1.6)
B	Tub	e2fimB1	A: beta barrels	X: Transcriptional factor tubby, C-terminal domain (From Topology)	H: Transcriptional factor tubby, C-terminal domain (From Topology)	T: Transcriptional factor tubby, C-terminal domain	F: Tub	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.90.10	Alpha Beta	Alpha-Beta Barrel	Tubby Protein	Chain A	CATH (4.3.0)
B	3.20.90.10	Alpha Beta	Alpha-Beta Barrel	Tubby Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01167	Tub family (Tub)	Tub family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Tubby related protein 1	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding ion binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding ion binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding	protein localization localization cellular localization protein localization to cilium protein localization to organelle cellular macromolecule localization macromolecule localization cellular process detection of light stimulus involved in visual perception detection of light stimulus response to light stimulus multicellular organismal process detection of external stimulus sensory perception of light stimulus protein localization localization cellular localization protein localization to cilium protein localization to organelle cellular macromolecule localization macromolecule localization cellular process detection of light stimulus involved in visual perception detection of light stimulus response to light stimulus multicellular organismal process detection of external stimulus sensory perception of light stimulus system process nervous system process response to stimulus response to external stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of light stimulus involved in sensory perception response to abiotic stimulus response to radiation visual perception detection of stimulus involved in sensory perception multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis protein localization to photoreceptor outer segment protein localization to non-motile cilium developmental process sensory organ development eye development animal organ development retina development in camera-type eye visual system development multicellular organism development camera-type eye development anatomical structure development sensory system development system development regulation of localization import into cell positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization transport positive regulation of biological process vesicle-mediated transport cellular component organization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis positive regulation of cellular process regulation of endocytosis regulation of biological process regulation of transport biological regulation regulation of phagocytosis regulation of vesicle-mediated transport establishment of localization positive regulation of phagocytosis positive regulation of transport endocytosis cellular developmental process photoreceptor cell differentiation cell development eye morphogenesis neurogenesis neuron differentiation cell differentiation eye photoreceptor cell differentiation animal organ morphogenesis photoreceptor cell development eye photoreceptor cell development nervous system development generation of neurons anatomical structure morphogenesis sensory organ morphogenesis neuron development plasma membrane bounded cell projection organization cell projection organization neuron projection development dendrite development photoreceptor cell maintenance phagocytosis, recognition cell recognition	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection photoreceptor inner segment intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane non-motile cilium membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection photoreceptor inner segment intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane non-motile cilium 9+0 non-motile cilium neuron projection photoreceptor outer segment photoreceptor cell cilium extracellular region synapse cell junction axon axon terminus presynapse distal axon neuron projection terminus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR025659	Tubby-like, C-terminal	Homologous Superfamily
A, B	IPR000007	Tubby, C-terminal	Domain
A, B	IPR018066	Tubby, C-terminal, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O00294	Leber congenital amaurosis retinitis pigmentosa Leber congenital amaurosis 15 retinitis pigmentosa 14 cone-rod dystrophy colorectal adenoma Hashimoto thyroiditis retinal degeneration colorectal cancer inherited retinal dystrophy large cell medulloblastoma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.