2GGS | pdb_00002ggs

crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae2ggsA1 A: Profilin-likeX: Immunoglobulin-relatedH: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeT: CystatinF:ECOD (20:10:01)
Be2ggsB1 A: HTHX: HTHH: tetra-helical, lambda repressor-likeT: HTHPF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.90.25.10 Alpha Beta Alpha-Beta Complex UDP-galactose 4-epimerase domain 1CATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.90.25.10 Alpha Beta Alpha-Beta Complex UDP-galactose 4-epimerase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF04321RmlD substrate binding domain (RmlD_sub_bind)RmlD substrate binding domainL-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucl ...L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide [1,2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
273aa long hypothetical dTDP-4-dehydrorhamnose reductase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B
IPR029903RmlD-like, substrate binding domainDomain