2HZ7
Crystal structure of the Glutaminyl-tRNA synthetase from Deinococcus radiodurans
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA-synt_1c_C_N_1 | e2hz7A4 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: tRNA-synt_1c_C_N_1 | ECOD (1.6) |
A | tRNA-synt_1c_C_C | e2hz7A3 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: tRNA-synt_1c_C_C | ECOD (1.6) |
A | tRNA-synt_1c | e2hz7A5 | A: alpha bundles | X: Zn-binding domain in glutaminyl-tRNA synthetase (From Topology) | H: Zn-binding domain in glutaminyl-tRNA synthetase (From Topology) | T: Zn-binding domain in glutaminyl-tRNA synthetase | F: tRNA-synt_1c | ECOD (1.6) |
A | tRNA-synt_1c | e2hz7A6 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1c | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 3.90.800.10 | Alpha Beta | Alpha-Beta Complex | Glutamyl-tRNA Synthetase | domain 3 | CATH (4.3.0) |
A | 1.10.1160.10 | Mainly Alpha | Orthogonal Bundle | Glutamyl-tRNA Synthetase | domain 2 | CATH (4.3.0) |
A | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00749 | tRNA synthetases class I (E and Q), catalytic domain (tRNA-synt_1c) | tRNA synthetases class I (E and Q), catalytic domain | Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). | Domain | |
PF03950 | tRNA synthetases class I (E and Q), anti-codon binding domain (tRNA-synt_1c_C) | tRNA synthetases class I (E and Q), anti-codon binding domain | This entry represents the first of the two ribosomal L25-like domains of the anticodon binding domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some o ... | Domain | |
PF20974 | tRNA synthetases class I (E and Q), anti-codon binding domain (tRNA-synt_1c_C2) | tRNA synthetases class I (E and Q), anti-codon binding domain | This entry represents the second ribosomal L25 like domain which is part of the anticodon binding domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In som ... | Domain |