2IFG | pdb_00002ifg

Structure of the extracellular segment of human TRKA in complex with nerve growth factor


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyNgr ectodomain-like 8030338 4002278 SCOP2 (2022-06-29)
ASCOP2 FamilyI set domains 8054810 4007543 SCOP2 (2022-06-29)
ASCOP2 FamilyI set domains 8055581 4007543 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyL domain-like 8042717 3001010 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8054811 3000071 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8055582 3000071 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8055582 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyL domain-like 8042717 3001010 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054811 3000071 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyCystine-knot cytokines 8038796 3000846 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyCystine-knot cytokines 8038796 3000846 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AIg_2e2ifgA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ig_2ECOD (v294.1)
ALRR_8,LRRCT_2e2ifgA2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeatsT: Leucine-rich repeatsF: LRR_8,LRRCT_2ECOD (v294.1)
AV-sete2ifgA4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
BCopper-binde2ifgB1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
BLRR_8,LRRCT_2e2ifgB2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: LRR_8,LRRCT_2ECOD (v294.1)
BV-sete2ifgB4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
C [auth E]zf-C2H2e2ifgE1 A: a/b three-layered sandwichesX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-C2H2ECOD (v294.1)
D [auth F]zf-C2H2e2ifgF1 A: a/b three-layered sandwichesX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-C2H2ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF16920Leucine rich repeat C-terminal motif (LRRCT_2)Leucine rich repeat C-terminal motif- Motif
C [auth E],
D [auth F]
PF00243Nerve growth factor family (NGF)Nerve growth factor familyDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
High affinity nerve growth factor receptor
C [auth E],
D [auth F]
Beta-nerve growth factor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A, B
IPR008266Tyrosine-protein kinase, active siteActive Site
A, B
IPR020635Tyrosine-protein kinase, catalytic domainDomain
A, B
IPR000719Protein kinase domainDomain
A, B
IPR001611Leucine-rich repeatRepeat
A, B
IPR020777Growth factor receptor NTRKFamily
A, B
IPR031635Growth factor receptor NTRK, leucine rich repeat C-terminalDomain
A, B
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, B
IPR000483Cysteine-rich flanking region, C-terminalDomain
A, B
IPR007110Immunoglobulin-like domainDomain
A, B
IPR017441Protein kinase, ATP binding siteBinding Site
A, B
IPR040665Tyrosine kinase receptor A, transmembrane domainDomain
A, B
IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
A, B
IPR002011Tyrosine-protein kinase, receptor class II, conserved siteConserved Site
A, B
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A, B
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
A, B
IPR050122Receptor Tyrosine KinaseFamily
A, B
IPR020461High affinity nerve growth factor receptor NTRK1Family
C [auth E],
D [auth F]
IPR020408Nerve growth factor-likeFamily
C [auth E],
D [auth F]
IPR019846Nerve growth factor conserved siteConserved Site
C [auth E],
D [auth F]
IPR029034Cystine-knot cytokineHomologous Superfamily
C [auth E],
D [auth F]
IPR020437Nerve growth factor, beta subunit, mammalianFamily
C [auth E],
D [auth F]
IPR002072Nerve growth factor-relatedDomain
C [auth E],
D [auth F]
IPR020425Nerve growth factor, beta subunitFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosP04629
C [auth E],
D [auth F]
PharosP01138