2IGO | pdb_00002igo

Crystal structure of pyranose 2-oxidase H167A mutant with 2-fluoro-2-deoxy-D-glucose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth D]	d2igod1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
C [auth D]	d2igod2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
D [auth C]	d2igoc1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
D [auth C]	d2igoc2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
G [auth H]	d2igoh1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
G [auth H]	d2igoh2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
H [auth G]	d2igog1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
H [auth G]	d2igog2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
F	d2igof1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
F	d2igof2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
E	d2igoe1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
E	d2igoe2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
B	d2igob1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
B	d2igob2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
A	d2igoa1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
A	d2igoa2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	YceM-like_C	e2igoD1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
C [auth D]	NAD_binding_8	e2igoD2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
D [auth C]	YceM-like_C	e2igoC1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
D [auth C]	NAD_binding_8	e2igoC2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
G [auth H]	YceM-like_C	e2igoH1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
G [auth H]	NAD_binding_8	e2igoH2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
H [auth G]	YceM-like_C	e2igoG1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
H [auth G]	NAD_binding_8	e2igoG2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
F	YceM-like_C	e2igoF1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
F	NAD_binding_8	e2igoF2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
E	YceM-like_C	e2igoE1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
E	NAD_binding_8	e2igoE2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
B	YceM-like_C	e2igoB1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
B	NAD_binding_8	e2igoB2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
A	YceM-like_C	e2igoA1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
A	NAD_binding_8	e2igoA2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth D]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
D [auth C]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
G [auth H]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
H [auth G]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
F	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
E	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
B	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
A	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	Pyranose oxidase	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors pyranose oxidase activity catalytic activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR012814	Pyranose 2-oxidase	Family
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR007867	Glucose-methanol-choline oxidoreductase, C-terminal	Domain
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR051473	Pyranose 2-oxidase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.