2IXD | pdb_00002ixd

Crystal structure of the putative deacetylase BC1534 from Bacillus cereus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ixda_	Alpha and beta proteins (a/b)	LmbE-like	LmbE-like	automated matches	automated matches	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
B	d2ixdb_	Alpha and beta proteins (a/b)	LmbE-like	LmbE-like	automated matches	automated matches	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	LmbE-like	8083933	3000960	SCOP2B (2022-06-29)
B	SCOP2 Family	LmbE-like	8083932	4001164	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	LmbE-like	8083933	3000960	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2ixdA1	A: Profilin-like	X: sensor domains	H: sensor domains	T: PRC_RimM	F:	ECOD (20:10:01)
B		e2ixdB1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: DAO, NAD_binding_8	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10320	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	LmbE-like	CATH (4.3.0)
B	3.40.50.10320	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	LmbE-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02585	GlcNAc-PI de-N-acetylase (PIG-L)	GlcNAc-PI de-N-acetylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	LMBE-RELATED PROTEIN	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding ion binding binding metal ion binding small molecule binding deacetylase activity deacylase activity	carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process small molecule biosynthetic process oxoacid metabolic process glycoside metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process bacillithiol biosynthetic process glycoside biosynthetic process sulfur compound biosynthetic process biosynthetic process carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process small molecule biosynthetic process oxoacid metabolic process glycoside metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process bacillithiol biosynthetic process glycoside biosynthetic process sulfur compound biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process sulfur compound metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023842	Bacillithiol biosynthesis deacetylase, BshB1	Family
A, B	IPR024078	Putative deacetylase LmbE-like domain superfamily	Homologous Superfamily
A, B	IPR003737	N-acetylglucosaminyl phosphatidylinositol deacetylase-related	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.