2JDI
Ground state structure of F1-ATPase from bovine heart mitochondria (Bovine F1-ATPase crystallised in the absence of azide)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | ATP synthase nucleotide-binding domain-like | 8018242 | 4004011 | SCOP2 (2022-06-29) |
A | SCOP2 Family | ATP synthase alpha/beta N-terminal domain-like | 8018247 | 4002275 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecA-like P-loop NTPases | 8018243 | 3002019 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018248 | 3001034 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056868 | 3000684 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018243 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056868 | 3000684 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018248 | 3001034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056868 | 3000684 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018248 | 3001034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018243 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2 Family | ATP synthase nucleotide-binding domain-like | 8018252 | 4004011 | SCOP2 (2022-06-29) |
D | SCOP2 Family | ATP synthase alpha/beta N-terminal domain-like | 8018257 | 4002275 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | RecA-like P-loop NTPases | 8018253 | 3002019 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018258 | 3001034 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056904 | 3000684 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018253 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018258 | 3001034 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056904 | 3000684 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018258 | 3001034 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018253 | 3002019 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056904 | 3000684 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Epsilon subunit of F1F0-ATP synthase C-terminal domain | 8037350 | 3000785 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ATP-synt_ab_N | e2jdiA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
A | ATP-synt_ab_C | e2jdiA2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
A | ATP-synt_ab | e2jdiA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
B | ATP-synt_ab_N | e2jdiB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
B | ATP-synt_ab_C | e2jdiB2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
B | ATP-synt_ab | e2jdiB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
C | ATP-synt_ab_N | e2jdiC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
C | ATP-synt_ab_C | e2jdiC2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
C | ATP-synt_ab | e2jdiC3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
D | ATP-synt_ab_N | e2jdiD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
D | ATP-synt_ab_C | e2jdiD2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
D | ATP-synt_ab | e2jdiD3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
E | ATP-synt_ab_N | e2jdiE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
E | ATP-synt_ab_C | e2jdiE3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
E | ATP-synt_ab | e2jdiE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
F | ATP-synt_ab_N | e2jdiF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
F | ATP-synt_ab_C | e2jdiF3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
F | ATP-synt_ab | e2jdiF2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
G | ATP-synt | e2jdiG1 | A: a/b three-layered sandwiches | X: ATP synthase (F1-ATPase), gamma subunit (From Topology) | H: ATP synthase (F1-ATPase), gamma subunit (From Topology) | T: ATP synthase (F1-ATPase), gamma subunit | F: ATP-synt | ECOD (1.6) |
H | UNK_F_TYPE | e2jdiH1 | A: beta sandwiches | X: Epsilon subunit of F1F0-ATP synthase-N | H: Epsilon subunit of F1F0-ATP synthase-N (From Topology) | T: Epsilon subunit of F1F0-ATP synthase-N | F: UNK_F_TYPE | ECOD (1.6) |
H | KOG1758 | e2jdiH2 | A: alpha bundles | X: Long alpha-hairpin | H: Epsilon subunit of F1F0-ATP synthase C-terminal domain (From Topology) | T: Epsilon subunit of F1F0-ATP synthase C-terminal domain | F: KOG1758 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | - | Domain | |
PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
PF00231 | ATP synthase (ATP-synt) | ATP synthase | - | Domain | |
PF21335 | Metazoan delta subunit of F1F0-ATP synthase, C-terminal domain (ATPD_C_metazoa) | Metazoan delta subunit of F1F0-ATP synthase, C-terminal domain | F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from animals (called epsilon in bacteria or chlorop ... | Domain | |
PF04627 | Mitochondrial ATP synthase epsilon chain (ATP-synt_Eps) | Mitochondrial ATP synthase epsilon chain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | F-type ATPase | F1-ATPase, Ground State Structure |