crystal structure of HapK from Hahella chejuensis


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyDimeric alpha+beta barrel 8103646 3000089 SCOP2B (2022-06-29)
ASCOP2 FamilyHapK-like 8046814 4005311 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDimeric alpha+beta barrel 8103646 3000089 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPK_Tyr_Ser-Thre2jdjB1 A: beta barrelsX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.2)
AHydrolasee2jdjA1 A: beta barrelsX: Profilin-likeH: sensor domainsT: sensor domainsF: HydrolaseECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
A3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF11639REDY-like protein HapK (HapK)REDY-like protein HapKThis family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C terminal tail which i ...This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C terminal tail which it uses for dimer formation [1]. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM [1]. Structure prediction suggests this protein is likely to form a homodimer adopting dimeric alpha/beta barrel fold.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR021667REDY-like protein HapKFamily