2JJS
Structure of human CD47 in complex with human signal regulatory protein (SIRP) alpha
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2jjsa_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2jjsb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2jjsb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | V-set_CD47 | e2jjsC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_CD47 | ECOD (1.6) |
D | V-set_CD47 | e2jjsD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_CD47 | ECOD (1.6) |
A | I-set_6 | e2jjsA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_6 | ECOD (1.6) |
B | I-set_6 | e2jjsB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08204 | CD47 immunoglobulin-like domain (V-set_CD47) | CD47 immunoglobulin-like domain | This family represents the CD47 leukocyte antigen V-set like Ig domain [1,2]. | Domain | |
PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR013270 | CD47 immunoglobulin-like | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR037805 | Leukocyte surface antigen CD47, IgV | Domain | |
IPR007110 | Immunoglobulin-like domain | Domain | |
IPR006704 | Leukocyte surface antigen CD47 | Family | |
IPR013147 | CD47-like, transmembrane | Domain | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR013106 | Immunoglobulin V-set domain | Domain | |
IPR003599 | Immunoglobulin domain subtype | Domain | |
IPR051755 | Immunoglobulin-like Cell Surface Receptor | Family | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR007110 | Immunoglobulin-like domain | Domain | |
IPR003597 | Immunoglobulin C1-set | Domain |