Structure of Anabaena Sensory Rhodopsin Determined by Solid State NMR Spectroscopy
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Cu_amine_oxidN2 | e2m3gC1 | A: beta barrels | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: L-aspartase middle domain-like | F: Cu_amine_oxidN2 | ECOD (v294.2) |
| B | Cu_amine_oxidN2 | e2m3gB1 | A: beta barrels | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: L-aspartase middle domain-like | F: Cu_amine_oxidN2 | ECOD (v294.2) |
| A | Thioredoxin | e2m3gA1 | A: beta barrels | X: PRTase-like | H: PRTase-like | T: PRTase-like | F: Thioredoxin | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 1.20.1070.10 | Mainly Alpha | Up-down Bundle | Rhopdopsin 7-helix transmembrane proteins | Rhodopsin 7-helix transmembrane proteins | CATH (4.3.0) |
| B | 1.20.1070.10 | Mainly Alpha | Up-down Bundle | Rhopdopsin 7-helix transmembrane proteins | Rhodopsin 7-helix transmembrane proteins | CATH (4.3.0) |
| A | 1.20.1070.10 | Mainly Alpha | Up-down Bundle | Rhopdopsin 7-helix transmembrane proteins | Rhodopsin 7-helix transmembrane proteins | CATH (4.3.0) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR018229 | Rhodopsin, retinal binding site | Binding Site | |
| IPR001425 | Archaeal/bacterial/fungal rhodopsins | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | Microbial and algal rhodopsins |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Bacterial, Algal, Viral, and Unusual Rhodopsins | Sensory Rhodopsin |














