2Q1W | pdb_00002q1w

Crystal structure of the Bordetella bronchiseptica enzyme WbmH in complex with NAD+

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2q1wa_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bordetella bronchiseptica ) [TaxId: 518 ],	SCOPe (2.08)
B	d2q1wb1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bordetella bronchiseptica ) [TaxId: 518 ],	SCOPe (2.08)
B	d2q1wb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bordetella bronchiseptica ) [TaxId: 518 ],	SCOPe (2.08)
C	d2q1wc1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bordetella bronchiseptica ) [TaxId: 518 ],	SCOPe (2.08)
C	d2q1wc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bordetella bronchiseptica ) [TaxId: 518 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	UDP-glucose 4-epimerase GalE-lke	8073957	4000088	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8073958	3000038	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8073958	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8073958	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_16, SKN1_KRE6_Sbg1	e2q1wA1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: Glyco_hydro_16, SKN1_KRE6_Sbg1	ECOD (develop294)
B		e2q1wB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F:	ECOD (develop294)
C		e2q1wC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Putative nucleotide sugar epimerase/ dehydratase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding transferase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR050177	Bifunctional lipid A modification and metabolic enzymes	Family
A, B, C	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C	IPR001509	NAD-dependent epimerase/dehydratase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.