2Q3T
Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At3g22680
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2q3ta_ | All alpha proteins | Hypothetical protein At3g22680 | Hypothetical protein At3g22680 | Hypothetical protein At3g22680 | Hypothetical protein At3g22680 | thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RdDM_RDM1 | e2q3tA1 | A: alpha arrays | X: Hypothetical protein At3g22680 (From Topology) | H: Hypothetical protein At3g22680 (From Topology) | T: Hypothetical protein At3g22680 | F: RdDM_RDM1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.690 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | RDM1 protein domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09187 | RNA-directed DNA methylation 1 (RdDM_RDM1) | RNA-directed DNA methylation 1 | This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation [1]. As ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015270 | Protein RDM1, plant | Family | |
IPR036319 | RDM1 superfamily | Homologous Superfamily |