High Resolution Crystal Structure of Wheat Germ Agglutinin in Complex with N-Acetyl-D-Glucosamine
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth F] | d2uvof1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Plant lectins/antimicrobial peptides | Hevein-like agglutinin (lectin) domain | Wheat germ agglutinin (WGA) | (Triticum aestivum ) [TaxId: 4565 ], | SCOPe (2.08) |
| C [auth E] | d2uvoe1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Plant lectins/antimicrobial peptides | Hevein-like agglutinin (lectin) domain | Wheat germ agglutinin (WGA) | (Triticum aestivum ) [TaxId: 4565 ], | SCOPe (2.08) |
| B | d2uvob1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Plant lectins/antimicrobial peptides | Hevein-like agglutinin (lectin) domain | Wheat germ agglutinin (WGA) | (Triticum aestivum ) [TaxId: 4565 ], | SCOPe (2.08) |
| A | d2uvoa1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Plant lectins/antimicrobial peptides | Hevein-like agglutinin (lectin) domain | Wheat germ agglutinin (WGA) | (Triticum aestivum ) [TaxId: 4565 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth F] | Alginate_lyase2 | e2uvoF1 | A: alpha bundles | X: HTH | H: Nudix | T: Nudix | F: Alginate_lyase2 | ECOD (develop294) |
| C [auth E] | Alginate_lyase2 | e2uvoE1 | A: alpha bundles | X: HTH | H: Nudix | T: Nudix | F: Alginate_lyase2 | ECOD (develop294) |
| B | Alginate_lyase2 | e2uvoB1 | A: alpha bundles | X: HTH | H: Nudix | T: Nudix | F: Alginate_lyase2 | ECOD (develop294) |
| A | CH | e2uvoA1 | A: alpha bundles | X: Profilin-like | H: sensor domains | T: sensor domains | F: CH | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth F] | 3.30.60.10 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
| C [auth E] | 3.30.60.10 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
| B | 3.30.60.10 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
| A | 3.30.60.10 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, B, C [auth E], D [auth F] | PF00187 | Chitin recognition protein (Chitin_bind_1) | Chitin recognition protein | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A, B, C [auth E], D [auth F] | AGGLUTININ ISOLECTIN 1 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B, C [auth E], D [auth F] | IPR001002 | Chitin-binding, type 1 | Domain |
| A, B, C [auth E], D [auth F] | IPR018371 | Chitin-binding, type 1, conserved site | Conserved Site |
| A, B, C [auth E], D [auth F] | IPR036861 | Endochitinase-like superfamily | Homologous Superfamily |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| A, B, C [auth E], D [auth F] | PCA | Parent Component: GLN : AA0031 : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 |
