2V18 | pdb_00002v18

Crystal structure of the T. thermophilus dodecin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d2v18l_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
K	d2v18k_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
J	d2v18j_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
I	d2v18i_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
H	d2v18h_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
G	d2v18g_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
F	d2v18f_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2v18e_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
D	d2v18d_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2v18c_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
B	d2v18b_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d2v18a_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	HSP90	e2v18L1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
K	HSP90	e2v18K1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
J	HSP90	e2v18J1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
I	HSP90	e2v18I1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
H	HSP90	e2v18H1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
G	HSP90	e2v18G1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
F	HSP90	e2v18F1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
E	HSP90	e2v18E1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
D	HSP90	e2v18D1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
C	HSP90	e2v18C1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
B	HSP90	e2v18B1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)
A	HSP90	e2v18A1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: HSP90	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
K	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
J	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
I	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
H	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
G	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
F	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
E	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
D	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
C	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
B	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
A	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07311	Dodecin (Dodecin)	Dodecin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	DODECIN	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036694	Dodecin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009923	Dodecin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025543	Dodecin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050049	Dodecin, bacteria	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.