2V5P | pdb_00002v5p

COMPLEX STRUCTURE OF HUMAN IGF2R DOMAINS 11-13 BOUND TO IGF-II

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2v5pd1	Small proteins	Insulin-like	Insulin-like	Insulin-like	Insulin-like growth factor	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2v5pc1	Small proteins	Insulin-like	Insulin-like	Insulin-like	Insulin-like growth factor	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Insulin-like	8070331	3000307	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Insulin-like	8070331	3000307	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mannose 6-phosphate receptor domain	8038767	3001527	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mannose 6-phosphate receptor domain	8038767	3001527	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	IGFBP	e2v5pD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v294.1)
C	IGFBP	e2v5pC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v294.1)
B	PHP	e2v5pB4	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (v294.1)
A	Ribosomal_L7Ae	e2v5pA1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: C-terminal UvrC-binding domain of UvrB	T: C-terminal UvrC-binding domain of UvrB	F: Ribosomal_L7Ae	ECOD (v294.1)
A	Pyridoxal_deC	e2v5pA4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Pyridoxal_deC	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00049	Insulin/IGF/Relaxin family (Insulin)	Insulin/IGF/Relaxin family	Superfamily includes insulins; relaxins; insulin-like growth factor; and bombyxin. All are secreted regulatory hormones. Disulfide rich, all-alpha fold. Alignment includes B chain, linker (which is processed out of the final product), and A chain.	Domain
A, B	PF00878	Cation-independent mannose-6-phosphate receptor repeat (CIMR)	Cation-independent mannose-6-phosphate receptor repeat	-	Family
A, B	PF00040	Fibronectin type II domain (fn2)	Fibronectin type II domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	INSULIN-LIKE GROWTH FACTOR II	molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity growth factor activity protein binding binding signaling receptor binding insulin receptor binding protein tyrosine kinase activator activity enzyme regulator activity transmembrane receptor protein tyrosine kinase activator activity protein kinase regulator activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity growth factor activity protein binding binding signaling receptor binding insulin receptor binding protein tyrosine kinase activator activity enzyme regulator activity transmembrane receptor protein tyrosine kinase activator activity protein kinase regulator activity kinase activator activity enzyme activator activity protein kinase activator activity kinase regulator activity cell adhesion molecule binding protein-containing complex binding integrin binding hormone activity protein serine/threonine kinase activator activity insulin-like growth factor receptor binding	developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation regulation of muscle tissue development regulation of growth regulation of developmental process developmental growth skeletal muscle tissue development positive regulation of skeletal muscle tissue development positive regulation of biological process developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation regulation of muscle tissue development regulation of growth regulation of developmental process developmental growth skeletal muscle tissue development positive regulation of skeletal muscle tissue development positive regulation of biological process regulation of skeletal muscle tissue development striated muscle tissue development muscle structure development positive regulation of developmental process skeletal muscle organ development positive regulation of muscle organ development regulation of skeletal muscle tissue growth anatomical structure development positive regulation of skeletal muscle tissue growth regulation of multicellular organismal process muscle tissue development muscle organ development positive regulation of developmental growth regulation of biological process regulation of developmental growth animal organ development biological regulation positive regulation of striated muscle tissue development growth regulation of striated muscle tissue development tissue development positive regulation of growth positive regulation of muscle tissue development regulation of muscle organ development skeletal muscle tissue growth positive regulation of multicellular organismal process anatomical structure morphogenesis animal organ morphogenesis regulation of cellular process regulation of generation of precursor metabolites and energy positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of glycogen metabolic process positive regulation of metabolic process regulation of small molecule metabolic process small molecule metabolic process positive regulation of macromolecule metabolic process carbohydrate biosynthetic process primary metabolic process hexose metabolic process positive regulation of glucose metabolic process positive regulation of glycogen biosynthetic process biosynthetic process metabolic process energy reserve metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of carbohydrate metabolic process regulation of glycogen metabolic process regulation of metabolic process monosaccharide metabolic process regulation of glycogen biosynthetic process glucan biosynthetic process energy derivation by oxidation of organic compounds regulation of glucan biosynthetic process regulation of polysaccharide metabolic process polysaccharide metabolic process glucan metabolic process positive regulation of biosynthetic process regulation of carbohydrate metabolic process regulation of glucose metabolic process positive regulation of cellular process regulation of biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process glycogen metabolic process generation of precursor metabolites and energy regulation of macromolecule metabolic process glycogen biosynthetic process macromolecule biosynthetic process regulation of polysaccharide biosynthetic process regulation of carbohydrate biosynthetic process positive regulation of small molecule metabolic process glucose metabolic process negative regulation of developmental process negative regulation of biological process negative regulation of muscle cell differentiation regulation of cell differentiation muscle cell differentiation regulation of muscle cell differentiation negative regulation of cellular process negative regulation of cell differentiation cellular response to stimulus positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of response to stimulus regulation of cell communication phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling placenta development chordate embryonic development embryo development in utero embryonic development multicellular organism development embryonic placenta development embryo development ending in birth or egg hatching embryonic organ development cell surface receptor signaling pathway insulin-like growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway positive regulation of cell division cell division regulation of cell division positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle cellular component organization regulation of mitotic cell cycle positive regulation of cell cycle process cellular component organization or biogenesis cell cycle regulation of cell cycle cell cycle process mitotic nuclear division regulation of cell cycle process organelle fission positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle organelle organization nuclear division mitotic cell cycle process regulation of nuclear division cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation digestive system development gland development exocrine pancreas development pancreas development exocrine system development system development cellular response to nitrogen compound response to peptide hormone insulin receptor signaling pathway regulation of cellular response to insulin stimulus cellular response to endogenous stimulus response to hormone cellular response to hormone stimulus positive regulation of cellular response to insulin stimulus response to endogenous stimulus regulation of insulin receptor signaling pathway positive regulation of insulin receptor signaling pathway response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical response to insulin cellular response to insulin stimulus regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process regulation of leukocyte proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of activated T cell proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation regulation of activated T cell proliferation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation activated T cell proliferation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process gene expression nucleic acid metabolic process regulation of gene expression regulation of DNA-templated transcription endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of vascular endothelial cell proliferation regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation vascular endothelial cell proliferation epithelial cell proliferation positive regulation of vascular endothelial cell proliferation positive regulation of organ growth organ growth regulation of organ growth regulation of multicellular organism growth positive regulation of multicellular organism growth multicellular organism growth embryonic morphogenesis embryonic placenta morphogenesis striated muscle cell differentiation sexual reproduction reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation chromatin organization chromatin remodeling epigenetic programming of gene expression epigenetic regulation of gene expression multicellular organismal reproductive process genomic imprinting germ cell development negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	cellular anatomical structure extracellular region membrane-bounded organelle vesicle lumen intracellular anatomical structure intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen intracellular membrane-bounded organelle secretory granule lumen endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle cellular anatomical structure extracellular region membrane-bounded organelle vesicle lumen intracellular anatomical structure intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen intracellular membrane-bounded organelle secretory granule lumen endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen organelle secretory granule secretory vesicle cytoplasm platelet alpha granule vesicle platelet alpha granule lumen extracellular space
A, B	CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR	insulin-like growth factor binding protein binding binding growth factor binding phosphoprotein binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding G-protein alpha-subunit binding insulin-like growth factor receptor activity molecular transducer activity catalytic activity, acting on a protein kinase activity insulin-like growth factor binding protein binding binding growth factor binding phosphoprotein binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding G-protein alpha-subunit binding insulin-like growth factor receptor activity molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity retinoic acid binding organic acid binding isoprenoid binding retinoid binding ion binding anion binding lipid binding carboxylic acid binding monocarboxylic acid binding identical protein binding protein-containing complex binding retromer complex binding insulin-like growth factor II binding enzyme binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process cellular process apoptotic process programmed cell death positive regulation of cellular process biological process involved in interspecies interaction between organisms host-mediated perturbation of viral process modulation of process of another organism host-mediated activation of viral process host-mediated perturbation of symbiont process localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development response to retinoic acid response to lipid response to stimulus response to chemical response to oxygen-containing compound cellular response to stimulus signaling signal transduction cell communication cellular localization establishment of localization in cell vacuolar transport intracellular transport lysosomal transport animal organ regeneration regeneration G protein-coupled receptor signaling pathway post-embryonic development response to tetrachloromethane	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle nucleus membrane-enclosed lumen endomembrane system intracellular organelle lumen organelle envelope lumen organelle envelope organelle lumen nuclear envelope lumen nuclear envelope Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network Golgi membrane perinuclear region of cytoplasm endosome membrane endosome anchoring junction cell junction focal adhesion cell-substrate junction cell surface cell periphery plasma membrane transport vesicle early endosome trans-Golgi network transport vesicle Golgi-associated vesicle secretory granule secretory vesicle secretory granule membrane trans-Golgi network membrane clathrin coat membrane coat protein-containing complex membrane protein complex coated membrane late endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR022350	Insulin-like growth factor IGF-1/2	Family
C, D	IPR016179	Insulin-like	Domain
C, D	IPR013576	Insulin-like growth factor II E-peptide, C-terminal	Domain
C, D	IPR022352	Insulin/IGF/relaxin	Family
C, D	IPR022334	Insulin-like growth factor II	Family
C, D	IPR022353	Insulin, conserved site	Conserved Site
C, D	IPR036438	Insulin-like superfamily	Homologous Superfamily
A, B	IPR000562	Fibronectin type II domain	Domain
A, B	IPR009011	Mannose-6-phosphate receptor binding domain superfamily	Homologous Superfamily
A, B	IPR044865	MRH domain	Domain
A, B	IPR036943	Fibronectin type II domain superfamily	Homologous Superfamily
A, B	IPR000479	Cation-independent mannose-6-phosphate receptor repeat	Repeat
A, B	IPR013806	Kringle-like fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: P01344	Beckwith-Wiedemann syndrome Silver-Russell syndrome kidney Wilms tumor Silver-Russell syndrome 3 adrenal cortex carcinoma rhabdomyosarcoma Alzheimer disease hepatoblastoma Bone Diseases, Developmental liver cancer colorectal cancer placenta disease Lewy body dementia malignant colon neoplasm Parkinson disease Beckwith-Wiedemann syndrome Silver-Russell syndrome kidney Wilms tumor Silver-Russell syndrome 3 adrenal cortex carcinoma rhabdomyosarcoma Alzheimer disease hepatoblastoma Bone Diseases, Developmental liver cancer colorectal cancer placenta disease Lewy body dementia malignant colon neoplasm Parkinson disease anemia atherosclerosis obesity disorder hypoglycemia isolated hemihyperplasia polyhydramnios large cell medulloblastoma prostate carcinoma cervical cancer lung cancer malignant mesothelioma common variable immunodeficiency type 1 diabetes mellitus Duchenne muscular dystrophy adrenal carcinoma ovarian cancer genetic endocrine growth disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia hepatocellular carcinoma Pick disease intellectual disability juvenile dermatomyositis precancerous condition benign colon neoplasm breast carcinoma psoriasis rigid spine muscular dystrophy 1 colorectal carcinoma medulloblastoma Wilms tumor 1 cystic fibrosis Emery-Dreifuss muscular dystrophy fetal growth restriction pancreatic intraductal papillary-mucinous carcinoma hereditary Wilms tumor pilocytic astrocytoma invasive ductal breast carcinoma Becker muscular dystrophy limb-girdle muscular dystrophy prostate cancer cancer liver neoplasm colonic neoplasm malignant ependymoma schizophrenia congenital diaphragmatic hernia pancreatic intraductal papillary-mucinous neoplasm Perlman syndrome arteriosclerosis disorder pituitary cancer autism
A, B	Pharos: P11717	Alzheimer disease Parkinson disease congenital diaphragmatic hernia prostate cancer hepatocellular carcinoma Liver Cirrhosis, Experimental Lewy body dementia lung disease malignant pancreatic neoplasm myopathy ovarian cancer endomyocardial fibrosis spondyloarthropathy heart disease juvenile dermatomyositis Alzheimer disease Parkinson disease congenital diaphragmatic hernia prostate cancer hepatocellular carcinoma Liver Cirrhosis, Experimental Lewy body dementia lung disease malignant pancreatic neoplasm myopathy ovarian cancer endomyocardial fibrosis spondyloarthropathy heart disease juvenile dermatomyositis MALT lymphoma nephrolithiasis pancreatic ductal adenocarcinoma Pick disease psoriasis exocrine pancreatic carcinoma tuberculosis large cell medulloblastoma lysosomal storage disease mucopolysaccharidosis type 2 osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia plasma cell myeloma chronic kidney disease prostate carcinoma rheumatoid arthritis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.