2VN5 | pdb_00002vn5

The Clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2vn5d_	All alpha proteins	Type I dockerin domain	Type I dockerin domain	automated matches	automated matches	(Ruminiclostridium cellulolyticum ) [TaxId: 1521 ],	SCOPe (2.08)
B	d2vn5b_	All alpha proteins	Type I dockerin domain	Type I dockerin domain	automated matches	automated matches	(Ruminiclostridium cellulolyticum ) [TaxId: 1521 ],	SCOPe (2.08)
C	d2vn5c_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family III	Cohesin domain	(Ruminiclostridium cellulolyticum ) [TaxId: 1521 ],	SCOPe (2.08)
A	d2vn5a_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family III	Cohesin domain	(Ruminiclostridium cellulolyticum ) [TaxId: 1521 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Type I dockerin domain	8076419	3001894	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type I dockerin domain	8076419	3001894	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Carbohydrate-binding domain	8037604	3000706	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Carbohydrate-binding domain	8037604	3000706	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Redoxin	e2vn5D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Redoxin	ECOD (v294.1)
B	CH	e2vn5B1	A: a/b three-layered sandwiches	X: Profilin-like	H: sensor domains	T: sensor domains	F: CH	ECOD (v294.1)
C	Alpha-L-AF_C	e2vn5C1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Alpha-L-AF_C	ECOD (v294.1)
A	Alpha-L-AF_C	e2vn5A1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Alpha-L-AF_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	CATH (4.3.0)
B	1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	CATH (4.3.0)
C	2.60.40.680	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.680	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF00404	Dockerin type I domain (Dockerin_1)	Dockerin type I domain	The dockerin repeat is the binding partner of the cohesin domain Pfam:PF00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. The dockerin repeats, each bearing homology to the EF-hand calciu ...	The dockerin repeat is the binding partner of the cohesin domain Pfam:PF00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium [2]. This family contains two copies of the repeat.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	ENDOGLUCANASE A	hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity beta-glucosidase activity catalytic activity cellulase activity	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	cellular anatomical structure extracellular region cell surface
A, C	SCAFFOLDING PROTEIN	binding polysaccharide binding cellulose binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR002105	Dockerin type I repeat	Repeat
B, D	IPR016134	Dockerin domain	Domain
B, D	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
B, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
B, D	IPR001547	Glycoside hydrolase, family 5	Domain
B, D	IPR050386	Glycosyl Hydrolase 5 (Cellulase A)	Family
B, D	IPR036439	Dockerin domain superfamily	Homologous Superfamily
B, D	IPR018087	Glycoside hydrolase, family 5, conserved site	Conserved Site
A, C	IPR036966	Carbohydrate-binding module 3 superfamily	Homologous Superfamily
A, C	IPR005102	Carbohydrate binding X2 domain	Domain
A, C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, C	IPR001956	Carbohydrate-binding module 3	Domain
A, C	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, C	IPR002102	Cellulosome anchoring protein, cohesin domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.