2W97 | pdb_00002w97

Crystal Structure of eIF4E Bound to Glycerol and eIF4G1 peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	eIF4e-like	8037387	3001871	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	eIF4e-like	8037387	3001871	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e2w97B1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Tachylectin	F:	ECOD (20:10:01)
A		e2w97A1	A: Immunoglobulin-like beta-sandwich	X: sensor domains	H: sensor domains	T: Pyrophosphatase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
A	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01652	Eukaryotic initiation factor 4E (IF4E)	Eukaryotic initiation factor 4E		Domain
A	PF01652	Eukaryotic initiation factor 4E (IF4E)	Eukaryotic initiation factor 4E		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth E], D [auth F]	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1	translation factor activity translation initiation factor activity eukaryotic initiation factor 4E binding protein binding binding translation initiation factor binding RNA binding nucleic acid binding translation factor activity, RNA binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding translation factor activity translation initiation factor activity eukaryotic initiation factor 4E binding protein binding binding translation initiation factor binding RNA binding nucleic acid binding translation factor activity, RNA binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding mRNA binding molecular adaptor activity	regulation of growth regulation of biological process regulation of cellular process regulation of cellular component organization biological regulation growth positive regulation of biological process positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular process cellular component organization or biogenesis regulation of growth regulation of biological process regulation of cellular process regulation of cellular component organization biological regulation growth positive regulation of biological process positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular process cellular component organization or biogenesis positive regulation of cellular process primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process protein metabolic process macromolecule metabolic process positive regulation of protein metabolic process regulation of protein metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of metabolic process positive regulation of cellular component organization protein-containing complex organization positive regulation of cellular component biogenesis eukaryotic translation initiation factor 4F complex assembly regulation of cellular component biogenesis regulation of eukaryotic translation initiation factor 4F complex assembly cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly cellular component assembly positive regulation of eukaryotic translation initiation factor 4F complex assembly protein-containing complex assembly cellular response to stimulus response to stimulus positive regulation of translation positive regulation of macromolecule biosynthetic process post-transcriptional regulation of gene expression regulation of translation in response to stress cellular response to stress positive regulation of biosynthetic process response to stress positive regulation of translation in response to stress response to endoplasmic reticulum stress positive regulation of translation in response to endoplasmic reticulum stress regulation of biosynthetic process regulation of translation in response to endoplasmic reticulum stress regulation of gene expression positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process cap-dependent translational initiation cytoplasmic translation cytoplasmic translational initiation cellular response to nutrient levels response to nutrient levels multicellular organismal process regulation of presynapse assembly multicellular organism development regulation of presynapse organization cell junction assembly anatomical structure development regulation of synapse structure or activity regulation of synapse assembly synapse organization regulation of biological quality system development developmental process presynapse organization nervous system development regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly presynapse assembly multicellular organismal-level homeostasis homeostatic process energy homeostasis negative regulation of biological process negative regulation of translation negative regulation of cellular process miRNA-mediated gene silencing by inhibition of translation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process regulatory ncRNA-mediated post-transcriptional gene silencing regulatory ncRNA-mediated gene silencing miRNA-mediated post-transcriptional gene silencing negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process post-transcriptional gene silencing positive regulation of protein localization to cell periphery regulation of localization protein localization to cell periphery regulation of protein localization regulation of protein localization to cell periphery localization macromolecule localization positive regulation of protein localization intracellular protein localization regulation of cellular response to stress regulation of response to stimulus regulation of response to stress cellular developmental process generation of neurons neurogenesis neuron differentiation cell differentiation regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle cell cycle regulation of cell cycle cell cycle process positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition regulation of developmental process regulation of cell differentiation positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of neuron differentiation regulation of translational initiation negative regulation of catabolic process catabolic process autophagy regulation of catabolic process regulation of autophagy negative regulation of autophagy process utilizing autophagic mechanism behavioral defense response behavior fear response behavioral fear response defense response multicellular organismal response to stress	intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule membrane cytosol ribosome intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule membrane cytosol ribosome protein-containing complex eukaryotic translation initiation factor 4F complex RNA cap binding complex intracellular protein-containing complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E	translation factor activity translation initiation factor activity protein binding binding translation initiation factor binding eukaryotic initiation factor 4G binding RNA binding mRNA cap binding nucleic acid binding RNA cap binding mRNA binding RNA 7-methylguanosine cap binding transcription factor binding DNA-binding transcription factor binding translation factor activity translation initiation factor activity protein binding binding translation initiation factor binding eukaryotic initiation factor 4G binding RNA binding mRNA cap binding nucleic acid binding RNA cap binding mRNA binding RNA 7-methylguanosine cap binding transcription factor binding DNA-binding transcription factor binding enzyme binding	multicellular organismal process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of biological process regulation of cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation negative regulation of cellular process anatomical structure development negative regulation of cell differentiation system development multicellular organismal process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of biological process regulation of cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation negative regulation of cellular process anatomical structure development negative regulation of cell differentiation system development developmental process regulation of biological process negative regulation of developmental process biological regulation nervous system development generation of neurons cellular process negative regulation of neuron differentiation regulation of neuron differentiation primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process protein metabolic process macromolecule metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of protein metabolic process negative regulation of metabolic process regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process modulation of chemical synaptic transmission signaling regulation of translation at synapse, modulating synaptic transmission cell communication synaptic signaling postsynaptic modulation of chemical synaptic transmission trans-synaptic signaling regulation of signaling cell-cell signaling regulation of translation at postsynapse regulation of translation at synapse chemical synaptic transmission regulation of translation at postsynapse, modulating synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport intracellular transport establishment of localization RNA export from nucleus establishment of RNA localization macromolecule localization cellular response to stimulus response to ketone response to lipid response to stimulus cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to glucocorticoid stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to corticosteroid stimulus response to corticosteroid cellular response to chemical stimulus response to chemical cellular response to lipid response to dexamethasone maintenance of cell number stem cell population maintenance mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process behavioral defense response behavior fear response behavioral fear response defense response response to stress multicellular organismal response to stress positive regulation of biological process positive regulation of cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle regulation of cell cycle positive regulation of cellular process	protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body nucleoplasm organelle lumen nuclear ribonucleoprotein granule nuclear lumen extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol chromatoid body synapse cell junction glutamatergic synapse perinuclear region of cytoplasm P-body eukaryotic translation initiation factor 4F complex RNA cap binding complex intracellular protein-containing complex postsynapse
A	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E	translation factor activity translation initiation factor activity protein binding binding translation initiation factor binding eukaryotic initiation factor 4G binding RNA binding mRNA cap binding nucleic acid binding RNA cap binding mRNA binding RNA 7-methylguanosine cap binding transcription factor binding DNA-binding transcription factor binding translation factor activity translation initiation factor activity protein binding binding translation initiation factor binding eukaryotic initiation factor 4G binding RNA binding mRNA cap binding nucleic acid binding RNA cap binding mRNA binding RNA 7-methylguanosine cap binding transcription factor binding DNA-binding transcription factor binding enzyme binding	multicellular organismal process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of biological process regulation of cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation negative regulation of cellular process anatomical structure development negative regulation of cell differentiation system development multicellular organismal process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of biological process regulation of cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation negative regulation of cellular process anatomical structure development negative regulation of cell differentiation system development developmental process regulation of biological process negative regulation of developmental process biological regulation nervous system development generation of neurons cellular process negative regulation of neuron differentiation regulation of neuron differentiation primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process protein metabolic process macromolecule metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of protein metabolic process negative regulation of metabolic process regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process modulation of chemical synaptic transmission signaling regulation of translation at synapse, modulating synaptic transmission cell communication synaptic signaling postsynaptic modulation of chemical synaptic transmission trans-synaptic signaling regulation of signaling cell-cell signaling regulation of translation at postsynapse regulation of translation at synapse chemical synaptic transmission regulation of translation at postsynapse, modulating synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport intracellular transport establishment of localization RNA export from nucleus establishment of RNA localization macromolecule localization cellular response to stimulus response to ketone response to lipid response to stimulus cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to glucocorticoid stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to corticosteroid stimulus response to corticosteroid cellular response to chemical stimulus response to chemical cellular response to lipid response to dexamethasone maintenance of cell number stem cell population maintenance mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process behavioral defense response behavior fear response behavioral fear response defense response response to stress multicellular organismal response to stress positive regulation of biological process positive regulation of cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle regulation of cell cycle positive regulation of cellular process	protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body nucleoplasm organelle lumen nuclear ribonucleoprotein granule nuclear lumen extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol chromatoid body synapse cell junction glutamatergic synapse perinuclear region of cytoplasm P-body eukaryotic translation initiation factor 4F complex RNA cap binding complex intracellular protein-containing complex postsynapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth E], D [auth F]	IPR016024	Armadillo-type fold	Homologous Superfamily
C [auth E], D [auth F]	IPR003307	W2 domain	Domain
C [auth E], D [auth F]	IPR003891	Initiation factor eIF-4 gamma, MA3	Domain
C [auth E], D [auth F]	IPR003890	MIF4G-like, type 3	Domain
B	IPR023398	Translation Initiation factor eIF- 4e-like	Homologous Superfamily
B	IPR019770	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	Conserved Site
B	IPR001040	Translation Initiation factor eIF- 4e	Family
A	IPR023398	Translation Initiation factor eIF- 4e-like	Homologous Superfamily
A	IPR019770	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	Conserved Site
A	IPR001040	Translation Initiation factor eIF- 4e	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth E], D [auth F]	Pharos: Q04637	Parkinson disease 18, autosomal dominant, susceptibility to Parkinson disease adenoma Autosomal dominant late onset Parkinson disease glioblastoma neurodegenerative disease amyotrophic lateral sclerosis colorectal cancer intellectual disability non-small cell lung carcinoma astrocytic tumor gastric carcinoma large cell medulloblastoma ovarian cancer
B	Pharos: P06730	Neoplasm Invasiveness mantle cell lymphoma ovarian cancer primitive neuroectodermal tumor tuberculosis astrocytic tumor autism spectrum disorder cancer large cell medulloblastoma lymphangioma malignant ependymoma oligodendroglioma pilocytic astrocytoma renal cell carcinoma tuberous sclerosis Neoplasm Invasiveness mantle cell lymphoma ovarian cancer primitive neuroectodermal tumor tuberculosis astrocytic tumor autism spectrum disorder cancer large cell medulloblastoma lymphangioma malignant ependymoma oligodendroglioma pilocytic astrocytoma renal cell carcinoma tuberous sclerosis atypical teratoid rhabdoid tumor autism, susceptibility to, 19 disappearing bone disease lung lymphangioleiomyomatosis malignant glioma medulloblastoma osteosarcoma subependymal giant cell astrocytoma autism glioblastoma
A	Pharos: P06730	Neoplasm Invasiveness mantle cell lymphoma ovarian cancer primitive neuroectodermal tumor tuberculosis astrocytic tumor autism spectrum disorder cancer large cell medulloblastoma lymphangioma malignant ependymoma oligodendroglioma pilocytic astrocytoma renal cell carcinoma tuberous sclerosis Neoplasm Invasiveness mantle cell lymphoma ovarian cancer primitive neuroectodermal tumor tuberculosis astrocytic tumor autism spectrum disorder cancer large cell medulloblastoma lymphangioma malignant ependymoma oligodendroglioma pilocytic astrocytoma renal cell carcinoma tuberous sclerosis atypical teratoid rhabdoid tumor autism, susceptibility to, 19 disappearing bone disease lung lymphangioleiomyomatosis malignant glioma medulloblastoma osteosarcoma subependymal giant cell astrocytoma autism glioblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.