2WGM | pdb_00002wgm

Complete ion-coordination structure in the rotor ring of Na-dependent F-ATP synthase

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ATP-synt_C	e2wgmA1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: ATP-synt_C	ECOD (develop294)
E	Spt5-NGN	e2wgmE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
H	Spt5-NGN	e2wgmH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
IA [auth m]	Spt5-NGN	e2wgmm1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
L	Spt5-NGN	e2wgmL1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
T	Spt5-NGN	e2wgmT1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
X [auth b]	Spt5-NGN	e2wgmb1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
Z [auth d]	Spt5-NGN	e2wgmd1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
Y [auth c]	Spt5-NGN	e2wgmc1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
W [auth a]	Spt5-NGN	e2wgma1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
V	Spt5-NGN	e2wgmV1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
U	Spt5-NGN	e2wgmU1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
S	Spt5-NGN	e2wgmS1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
RA [auth v]	Spt5-NGN	e2wgmv1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
R	Spt5-NGN	e2wgmR1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
QA [auth u]	Spt5-NGN	e2wgmu1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
Q	Spt5-NGN	e2wgmQ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
PA [auth t]	Spt5-NGN	e2wgmt1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
P	Spt5-NGN	e2wgmP1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
OA [auth s]	Spt5-NGN	e2wgms1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
O	Spt5-NGN	e2wgmO1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
NA [auth r]	Spt5-NGN	e2wgmr1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
N	Spt5-NGN	e2wgmN1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
MA [auth q]	Spt5-NGN	e2wgmq1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
M	Spt5-NGN	e2wgmM1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
LA [auth p]	Spt5-NGN	e2wgmp1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
KA [auth o]	Spt5-NGN	e2wgmo1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
K	Spt5-NGN	e2wgmK1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
JA [auth n]	Spt5-NGN	e2wgmn1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
J	Spt5-NGN	e2wgmJ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
I	Spt5-NGN	e2wgmI1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
HA [auth l]	Spt5-NGN	e2wgml1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
GA [auth k]	Spt5-NGN	e2wgmk1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
G	Spt5-NGN	e2wgmG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
FA [auth j]	Spt5-NGN	e2wgmj1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
F	Spt5-NGN	e2wgmF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
EA [auth i]	Spt5-NGN	e2wgmi1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
DA [auth h]	Spt5-NGN	e2wgmh1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
D	Spt5-NGN	e2wgmD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
CA [auth g]	Spt5-NGN	e2wgmg1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
C	Spt5-NGN	e2wgmC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
BA [auth f]	Spt5-NGN	e2wgmf1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
B	Spt5-NGN	e2wgmB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
AA [auth e]	Spt5-NGN	e2wgme1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
E	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
H	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
IA [auth m]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
L	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
T	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
X [auth b]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Z [auth d]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Y [auth c]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
W [auth a]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
V	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
U	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
S	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
RA [auth v]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
R	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
QA [auth u]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
Q	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
PA [auth t]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
P	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
OA [auth s]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
O	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
NA [auth r]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
N	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
MA [auth q]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
M	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
LA [auth p]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
KA [auth o]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
K	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
JA [auth n]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
J	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
I	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
HA [auth l]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
GA [auth k]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
G	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
FA [auth j]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
F	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
EA [auth i]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
DA [auth h]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
D	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
CA [auth g]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
C	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
BA [auth f]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
B	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)
AA [auth e]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	ATP SYNTHASE SUBUNIT C, SODIUM ION SPECIFIC	binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	localization transport monoatomic ion transport monoatomic cation transport establishment of localization sodium ion transport metal ion transport	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	Family
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR000454	ATP synthase, F0 complex, subunit C	Family
A, AA [auth e], B, BA [auth f], C, A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth e], B, BA [auth f], C A, AA [auth e], B, BA [auth f], C, CA [auth g], D, DA [auth h], E, EA [auth i], F, FA [auth j], G, GA [auth k], H, HA [auth l], I, IA [auth m], J, JA [auth n], K, KA [auth o], L, LA [auth p], M, MA [auth q], N, NA [auth r], O, OA [auth s], P, PA [auth t], Q, QA [auth u], R, RA [auth v], S, T, U, V, W [auth a], X [auth b], Y [auth c], Z [auth d]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	Rotor (c₁₁) of Na⁺-dependent F-ATP Synthase with complete ion-coördination structure