2WVR | pdb_00002wvr

Human Cdt1:Geminin complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	Cdt1 geminin-binding domain	8051289	4000165	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Winged helix DNA-binding domain	8057020	3000034	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Geminin coiled-coil domain	8040031	3000277	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Geminin coiled-coil domain	8040031	3000277	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	CDT1	e2wvrC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: CDT1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.5.1180	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Geminin coiled-coil domain	CATH (4.3.0)
A	1.20.5.1180	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Geminin coiled-coil domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF08839	DNA replication factor CDT1 like (CDT1)	DNA replication factor CDT1 like	CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired o ...	CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	DNA REPLICATION FACTOR CDT1	chromatin binding binding DNA binding nucleic acid binding protein binding DNA polymerase binding enzyme binding	cellular process cell cycle mitotic cell cycle regulation of cellular process nuclear DNA replication cell cycle DNA replication regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle cell cycle process DNA-templated DNA replication regulation of biological process regulation of nuclear cell cycle DNA replication cellular process cell cycle mitotic cell cycle regulation of cellular process nuclear DNA replication cell cycle DNA replication regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle cell cycle process DNA-templated DNA replication regulation of biological process regulation of nuclear cell cycle DNA replication regulation of cell cycle process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process DNA replication regulation of DNA-templated DNA replication metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process mitotic metaphase chromosome alignment metaphase chromosome alignment cellular component organization localization chromosome localization organelle localization mitotic sister chromatid segregation cellular component organization or biogenesis chromosome segregation mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation cell division negative regulation of cellular process negative regulation of biological process negative regulation of cell cycle positive regulation of DNA replication positive regulation of biological process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of DNA metabolic process response to carbohydrate response to stimulus response to chemical response to sorbitol response to oxygen-containing compound positive regulation of DNA-templated DNA replication regulation of DNA-templated DNA replication initiation DNA replication initiation protein-containing complex organization DNA replication preinitiation complex assembly protein-DNA complex assembly cellular component biogenesis protein-DNA complex organization cellular component assembly protein-containing complex assembly cellular response to stimulus regulation of cell cycle phase transition signaling cell cycle phase transition intracellular signal transduction cell communication negative regulation of cell cycle phase transition signal transduction DNA replication checkpoint signaling DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling negative regulation of DNA-templated DNA replication negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA replication negative regulation of metabolic process negative regulation of DNA metabolic process positive regulation of chromatin binding positive regulation of molecular function regulation of molecular function regulation of binding positive regulation of binding	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle chromosome membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle chromosome chromosomal region kinetochore membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome nuclear body
A, B	GEMININ	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription factor binding protein binding binding DNA-binding transcription factor binding histone deacetylase binding enzyme binding chromatin binding	DNA-templated DNA replication protein-containing complex organization DNA replication preinitiation complex assembly nuclear DNA replication cell cycle DNA replication primary metabolic process protein-DNA complex assembly DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization DNA replication cellular component assembly DNA-templated DNA replication protein-containing complex organization DNA replication preinitiation complex assembly nuclear DNA replication cell cycle DNA replication primary metabolic process protein-DNA complex assembly DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization DNA replication cellular component assembly protein-containing complex assembly metabolic process cellular process macromolecule metabolic process cell cycle cellular component organization or biogenesis cell cycle process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of mitotic cell cycle regulation of cell cycle mitotic cell cycle developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis regulation of DNA replication regulation of DNA metabolic process negative regulation of cell cycle negative regulation of DNA-templated DNA replication negative regulation of DNA replication regulation of DNA-templated DNA replication negative regulation of DNA metabolic process positive regulation of chromatin binding positive regulation of molecular function regulation of molecular function regulation of binding positive regulation of binding regulation of DNA-templated DNA replication initiation DNA replication initiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex transcription repressor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex transcription repressor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR038090	DNA replication factor Cdt1, C-terminal WH domain superfamily	Homologous Superfamily
C	IPR032054	DNA replication factor Cdt1, C-terminal	Domain
C	IPR045173	DNA replication factor Cdt1	Family
C	IPR014939	CDT1 Geminin-binding domain-like	Domain
C	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR022786	Geminin/Multicilin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	Pharos: Q9H211	Meier-Gorlin syndrome Meier-Gorlin syndrome 4 ovarian cancer psoriasis adrenal cortex carcinoma breast cancer glioblastoma invasive ductal breast carcinoma malignant glioma non-small cell lung carcinoma Primary microcephaly atopic eczema cancer hepatocellular carcinoma large cell medulloblastoma Meier-Gorlin syndrome Meier-Gorlin syndrome 4 ovarian cancer psoriasis adrenal cortex carcinoma breast cancer glioblastoma invasive ductal breast carcinoma malignant glioma non-small cell lung carcinoma Primary microcephaly atopic eczema cancer hepatocellular carcinoma large cell medulloblastoma malignant mesothelioma osteosarcoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor intellectual disability lung adenocarcinoma medulloblastoma microcephaly
A, B	Pharos: O75496	Meier-Gorlin syndrome Meier-Gorlin syndrome 6 pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sjogren syndrome adrenal cortex carcinoma EAR, PATELLA, SHORT STATURE SYNDROME interstitial cystitis lymphoplasmacytic lymphoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma polycystic ovary syndrome astrocytic tumor glioblastoma lung adenocarcinoma malignant mesothelioma Meier-Gorlin syndrome Meier-Gorlin syndrome 6 pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sjogren syndrome adrenal cortex carcinoma EAR, PATELLA, SHORT STATURE SYNDROME interstitial cystitis lymphoplasmacytic lymphoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma polycystic ovary syndrome astrocytic tumor glioblastoma lung adenocarcinoma malignant mesothelioma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm breast fibroadenoma hepatocellular carcinoma lung cancer malignant pancreatic neoplasm nasopharyngeal carcinoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.